General information
PDB ID 6CC8
Title CRYSTAL STRUCTURE MBD3 MBD DOMAIN IN COMPLEX WITH METHYLATED CPG DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2018-02-06
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.95
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6cc8.pdb AB CDEF 0
Biounits:
6cc8.pdb1.pdb A CD 1
6cc8.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
MBD Domain O95983_1-71 1.9e-21 1 CL0081 A 1 70 CD  S-Bb S-Mj L-Bb L-Mj 
MBD Domain O95983_1-71 1.9e-21 1 CL0081 B 1 70 EF  H-Bb S-Bb S-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-71 C cytoplasm
A/B=1-71 C heterochromatin
A/B=1-71 C host cell nucleus
A/B=1-71 C nuclear chromatin
A/B=1-71 C nucleoplasm
A/B=1-71 C NuRD complex
A/B=1-71 C protein-containing complex
A/B=1-71 F chromatin binding
A/B=1-71 F DNA binding
A/B=1-71 F methyl-CpG binding
A/B=1-71 P aging
A/B=1-71 P ATP-dependent chromatin remodeling
A/B=1-71 P brain development
A/B=1-71 P DNA methylation-dependent heterochromatin assembly
A/B=1-71 P embryonic organ development
A/B=1-71 P heart development
A/B=1-71 P histone acetylation
A/B=1-71 P in utero embryonic development
A/B=1-71 P negative regulation of transcription by RNA polymerase II
A/B=1-71 P regulation of DNA methylation
A/B=1-71 P regulation of signal transduction by p53 class mediator
A/B=1-71 P response to estradiol
A/B=1-71 P response to nutrient levels
A/B=1-71 P tissue development
Sequences
Download file with secondary structure created by Stride  
6cc8.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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6cc8.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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