General information
PDB ID 6DBQ
Title CRYO-EM STRUCTURE OF RAG IN COMPLEX WITH 12-RSS AND 23-RSS SUBSTRATE DNAS
PDB header RECOMBINATION/DNA
Date 2018-05-03
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.22
Kind dna
Organism ESCHERICHIA COLI, DANIO RERIO
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6dbq.pdb ABCD EFGH 0
Biounits:
6dbq.pdb1.pdb ABCD EFGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RAG1 Family O13033_408-1029 0 1 No_clan A 408 1028 FGH  H-Bb H-Mj L-Mn 
RAG1 Family O13033_408-1029 0 1 No_clan C 408 1029 EFGH  H-Bb H-Mj L-Bb L-Mn 
RAG2 Repeat O13034_51-351 2.4e-161 1 CL0186 B 51 351   
RAG2 Repeat O13034_51-351 2.4e-161 1 CL0186 D 51 351   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/C=271-1031 C DNA recombinase complex
A/C=271-1031 C endodeoxyribonuclease complex
A/C=271-1031 C nucleus
A/C=271-1031 F endonuclease activity
A/C=271-1031 F histone binding
A/C=271-1031 F magnesium ion binding
A/C=271-1031 F metal ion binding
A/C=271-1031 F protein homodimerization activity
A/C=271-1031 F sequence-specific DNA binding
A/C=271-1031 F ubiquitin protein ligase activity
A/C=271-1031 F ubiquitin-protein transferase activity
A/C=271-1031 F zinc ion binding
A/C=271-1031 P adaptive immune response
A/C=271-1031 P B cell differentiation
A/C=271-1031 P histone monoubiquitination
A/C=271-1031 P pre-B cell allelic exclusion
A/C=271-1031 P protein-DNA complex assembly
A/C=271-1031 P somatic diversification of immune receptors via germline recombination within a single locus
A/C=271-1031 P T cell differentiation in thymus
A/C=271-1031 P V(D)J recombination
B/D=1-530 C DNA recombinase complex
B/D=1-530 C endodeoxyribonuclease complex
B/D=1-530 C nucleus
B/D=1-530 F chromatin binding
B/D=1-530 F methylated histone binding
B/D=1-530 F phosphatidylinositol binding
B/D=1-530 F phosphatidylinositol-3,4,5-trisphosphate binding
B/D=1-530 F phosphatidylinositol-3,4-bisphosphate binding
B/D=1-530 F phosphatidylinositol-3,5-bisphosphate binding
B/D=1-530 F phosphatidylinositol-4,5-bisphosphate binding
B/D=1-530 F sequence-specific DNA binding
B/D=1-530 F zinc ion binding
B/D=1-530 P B cell differentiation
B/D=1-530 P chromatin organization
B/D=1-530 P hematopoietic or lymphoid organ development
B/D=1-530 P lymphocyte differentiation
B/D=1-530 P protein-DNA complex assembly
B/D=1-530 P T cell differentiation
B/D=1-530 P T cell differentiation in thymus
B/D=1-530 P thymus development
B/D=1-530 P V(D)J recombination
Sequences
Download file with secondary structure created by Stride  
6dbq.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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