General information
Date 2018-07-05
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.42
Kind rna
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ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
6dzp.pdb1.pdb CDEFGHIJKLMNOPQRSTUVWXZabcdefgy3 AB 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_L30 Domain A0QSG7_4-54 1.4e-18 1 No_clan a 4 54 AB   
Ribosomal_L2_C Domain A0QSD4_126-251 5e-55 1 CL0107 C 126 251 A   
Ribosomal_L2 Domain A0QSD4_42-119 7.3e-34 1 CL0021 C 42 119 A   
Ribosomal_L5_C Domain A0QSG1_91-184 9.7e-39 1 No_clan F 91 184 AB   
Ribosomal_L5 Domain A0QSG1_31-87 1e-25 1 CL0652 F 31 87 AB   
Ribosomal_L36 Domain A0QSL4_1-37 2e-18 1 No_clan f 1 37 AB   
Ribosomal_L6 Domain A0QSG4_91-166 8.8e-21 1 No_clan G 91 166 A   
Ribosomal_L6 Domain A0QSG4_11-83 3.3e-18 1 No_clan G 11 83 A   
Ribosomal_L9_C Domain A0R7F6_63-150 3.8e-26 1 No_clan H 63 150 A   
Ribosomal_L9_N Domain A0R7F6_1-47 2.6e-19 1 No_clan H 1 47 A   
Ribosomal_L11_N Domain A0QS45_10-68 3.1e-29 1 No_clan J 11 68 A   
Ribosomal_L11 Domain A0QS45_73-141 5.8e-27 1 No_clan J 73 141 A   
Ribosomal_L14 Domain A0QSF9_1-122 3.2e-55 1 No_clan L 1 122 A   
Ribosomal_L22 Domain A0QSD6_12-115 9.1e-37 1 No_clan T 12 115 A   
Ribosomal_L25p Domain A0R3D2_11-97 2.6e-24 1 No_clan W 11 97 AB   
Ribosomal_TL5_C Domain A0R3D2_105-185 2e-17 1 No_clan W 105 185 A   
Ribosomal_L32p Family A0R3I9_2-50 3e-14 1 CL0167 b 2 50 A   
Ribosomal_L33 Family A0R551_8-52 3.8e-16 1 CL0167 c 7 53 A   
Ribosomal_L34 Family A0R7K0_4-47 6e-19 1 No_clan d 4 47 A   
Ribosomal_L3 Family A0QSD1_80-191 2.1e-18 1 CL0575 D 79 191 A   
Ribosomal_L4 Family A0QSD2_18-206 1.3e-65 1 No_clan E 18 206 A   
Ribosomal_L35p Family A0QYU7_2-62 1.1e-24 1 No_clan e 2 62 A   
Ribosomal_L31 Family A0R554_1-64 1.4e-20 1 No_clan g 1 64 AB   
Ribosomal_L10 Family A0QS62_1-98 5.1e-27 1 No_clan I 1 98 A   
DUF3182 Family A0QS62_21-91 0.00018 0 No_clan I 3 120 A   
Ribosomal_L13 Family A0QSP8_13-131 1.9e-54 1 No_clan K 14 138 A   
Ribosomal_L27A Family A0QSG8_29-146 8.9e-32 1 CL0588 M 29 146 A   
Ribosomal_L16 Family A0QSD8_4-132 2.8e-47 1 No_clan N 4 132 AB   
Ribosomal_L17 Family A0QSL9_20-116 5.6e-38 1 No_clan O 20 116 A   
Ribosomal_L18p Family I7FGD9_12-127 5.8e-45 1 CL0267 P 12 127 AB   
Ribosomal_L19 Family A0QV42_2-112 8.7e-51 1 CL0107 Q 2 112 A   
Ribosomal_L20 Family A0QYU6_3-109 1.3e-41 1 No_clan R 3 109 A   
Ribosomal_L21p Family A0R151_3-102 7.5e-34 1 No_clan S 3 102 A   
Ribosomal_L23 Family A0QSD3_9-95 1e-31 1 No_clan U 9 95 A   
ribosomal_L24 Family A0QSG0_38-105 1.1e-22 1 No_clan V 38 105 A   
KOW Family A0QSG0_5-36 2.4e-08 1 CL0107 V 5 36 A   
Ribosomal_L27 Family A0R150_8-80 3.4e-33 1 No_clan X 8 80 AB   
Ribosomal_L28 Family A0R552_3-62 1.2e-24 1 No_clan y 2 61 A   
Ribosomal_L29 Family A0QSD9_8-64 3.3e-25 1 CL0346 Z 8 64 A   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
a=1-61 C large ribosomal subunit
a=1-61 F structural constituent of ribosome
a=1-61 P translation
b=1-57 C large ribosomal subunit
b=1-57 F structural constituent of ribosome
b=1-57 P translation
C=1-278 C large ribosomal subunit
C=1-278 F rRNA binding
C=1-278 F structural constituent of ribosome
C=1-278 F transferase activity
C=1-278 P translation
c=1-54 C ribosome
c=1-54 F structural constituent of ribosome
c=1-54 P translation
D=1-217 C ribosome
D=1-217 F rRNA binding
D=1-217 F structural constituent of ribosome
D=1-217 P translation
d=1-47 C ribosome
d=1-47 F structural constituent of ribosome
d=1-47 P translation
e=1-64 C ribosome
e=1-64 F structural constituent of ribosome
e=1-64 P translation
E=2-215 C ribosome
E=2-215 F rRNA binding
E=2-215 F structural constituent of ribosome
E=2-215 P translation
f=1-37 C ribosome
f=1-37 F structural constituent of ribosome
f=1-37 P translation
F=2-187 C ribosome
F=2-187 F rRNA binding
F=2-187 F structural constituent of ribosome
F=2-187 F tRNA binding
F=2-187 P translation
G=1-179 C ribosome
G=1-179 F rRNA binding
G=1-179 F structural constituent of ribosome
G=1-179 P translation
H=1-151 C ribosome
H=1-151 F rRNA binding
H=1-151 F structural constituent of ribosome
H=1-151 P translation
I=1-175 C large ribosomal subunit
I=1-175 F large ribosomal subunit rRNA binding
I=1-175 F structural constituent of ribosome
I=1-175 P ribosome biogenesis
I=1-175 P translation
J=1-142 C ribosome
J=1-142 F large ribosomal subunit rRNA binding
J=1-142 F structural constituent of ribosome
J=1-142 P translation
K=2-147 C ribosome
K=2-147 F structural constituent of ribosome
K=2-147 P translation
L=1-122 C large ribosomal subunit
L=1-122 F rRNA binding
L=1-122 F structural constituent of ribosome
L=1-122 P translation
N=1-138 C ribosome
N=1-138 F rRNA binding
N=1-138 F structural constituent of ribosome
N=1-138 F tRNA binding
N=1-138 P translation
O=1-199 C ribosome
O=1-199 F structural constituent of ribosome
O=1-199 P translation
Q=1-113 C ribosome
Q=1-113 F structural constituent of ribosome
Q=1-113 P translation
R=1-129 C ribosome
R=1-129 F rRNA binding
R=1-129 F structural constituent of ribosome
R=1-129 P ribosomal large subunit assembly
R=1-129 P translation
S=2-103 C ribosome
S=2-103 F rRNA binding
S=2-103 F structural constituent of ribosome
S=2-103 P translation
T=2-153 C large ribosomal subunit
T=2-153 F rRNA binding
T=2-153 F structural constituent of ribosome
T=2-153 P translation
U=2-100 C ribosome
U=2-100 F rRNA binding
U=2-100 F structural constituent of ribosome
U=2-100 P translation
V=1-105 C ribosome
V=1-105 F rRNA binding
V=1-105 F structural constituent of ribosome
V=1-105 P translation
X=1-88 C ribosome
X=1-88 F structural constituent of ribosome
X=1-88 P translation
Z=1-77 C ribosome
Z=1-77 F structural constituent of ribosome
Z=1-77 P translation
Download file with secondary structure created by Stride  
6dzp.pdb1.pdb:   [ download sequences in FASTA format ]
3 (protein): 
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a (protein): 
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b (protein): 
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c (protein): 
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d (protein): 
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E (protein): 
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f (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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y (protein): 
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Z (protein): 
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