General information
PDB ID 6DZT
Title CRYO-EM STRUCTURE OF NUCLEOSOME IN COMPLEX WITH A SINGLE CHAIN ANTIBODY FRAGMENT
PDB header NUCLEAR PROTEIN
Date 2018-07-05
Experimental method ELECTRON MICROSCOPY
Resolution (A) 2.99
Kind dna
Organism DROSOPHILA MELANOGASTER, ESCHERICHIA COLI, MUS MUSCULUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6dzt.pdb ABCDEFGHMN IJ 0
Biounits:
6dzt.pdb1.pdb ABCDEFGHMN IJ 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P02299_39-132 1.6e-46 1 CL0012 A 37 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P84040_23-99 5e-08 1 CL0012 B 24 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P84051_14-90 6.2e-15 1 CL0012 C 13 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02283_30-99 3.1e-22 1 CL0012 D 28 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02299_39-132 3.4e-46 1 CL0012 E 38 131 IJ  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P84040_23-99 4.9e-08 1 CL0012 F 25 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P84051_14-90 9.2e-15 1 CL0012 G 14 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02283_30-99 3.1e-22 1 CL0012 H 28 98 IJ  H-Bb S-Bb L-Bb L-Mn 
V-set Domain 2.1e-19 1 CL0011 M 164 265
V-set Domain 2.6e-13 1 CL0011 M 27 141
V-set Domain 2.1e-19 1 CL0011 N 164 265
V-set Domain 2.6e-13 1 CL0011 N 27 141
Histone_H2A_C Family P84051_91-118 8.3e-18 1 No_clan C 91 118   
Histone_H2A_C Family P84051_91-118 1.1e-18 1 No_clan G 91 119   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E=1-136 C nuclear chromatin
A/E=1-136 C nuclear nucleosome
A/E=1-136 C nucleus
A/E=1-136 C polytene chromosome
A/E=1-136 C RCAF complex
A/E=1-136 F nucleosomal DNA binding
A/E=1-136 F protein heterodimerization activity
A/E=1-136 P nucleosome assembly
B/F=2-103 C chromosome
B/F=2-103 C host cell nucleus
B/F=2-103 C nuclear chromosome
B/F=2-103 C nucleosome
B/F=2-103 C RCAF complex
B/F=2-103 F DNA binding
B/F=2-103 F histone binding
B/F=2-103 F protein heterodimerization activity
B/F=2-103 P DNA-templated transcription, initiation
B/F=2-103 P nucleosome assembly
C/G=1-124 C chromosome
C/G=1-124 C nuclear chromatin
C/G=1-124 C nuclear nucleosome
C/G=1-124 C nucleosome
C/G=1-124 C nucleus
C/G=1-124 C polytene chromosome
C/G=1-124 C polytene chromosome band
C/G=1-124 F DNA binding
C/G=1-124 F protein heterodimerization activity
C/G=1-124 P chromatin organization
C/G=1-124 P chromatin silencing
C/G=1-124 P larval somatic muscle development
C/G=1-124 P nucleosome assembly
D/H=2-123 C nucleosome
D/H=2-123 C nucleus
D/H=2-123 F DNA binding
D/H=2-123 F protein heterodimerization activity
D/H=2-123 F protein-containing complex binding
D/H=2-123 P chromatin assembly or disassembly
D/H=2-123 P nucleosome assembly
Sequences
Download file with secondary structure created by Stride  
6dzt.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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M (protein): 
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N (protein): 
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