General information
PDB ID 6EDB
Title CRYSTAL STRUCTURE OF SRY.HCGAS-21BP DSDNA COMPLEX
PDB header TRANSFERASE/DNA
Date 2018-08-09
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.21
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6edb.pdb AB CD 0
Biounits:
6edb.pdb1.pdb AB CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HMG_box Domain Q05066_60-128 3.2e-26 1 CL0114 B 6 72 CD  H-Bb H-Mn L-Bb 
Mab-21 Family Q8N884_214-510 7.2e-80 1 No_clan A 214 510 CD  H-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=157-522 C cytosol
A/B=157-522 C nucleus
A/B=157-522 C plasma membrane
A/B=157-522 C site of double-strand break
A/B=157-522 F ATP binding
A/B=157-522 F chromatin binding
A/B=157-522 F cyclic-GMP-AMP synthase activity
A/B=157-522 F DNA binding
A/B=157-522 F double-stranded DNA binding
A/B=157-522 F GTP binding
A/B=157-522 F metal ion binding
A/B=157-522 F phosphatidylinositol-4,5-bisphosphate binding
A/B=157-522 P activation of innate immune response
A/B=157-522 P cellular response to DNA damage stimulus
A/B=157-522 P cellular response to exogenous dsRNA
A/B=157-522 P defense response to virus
A/B=157-522 P determination of adult lifespan
A/B=157-522 P DNA repair
A/B=157-522 P innate immune response
A/B=157-522 P negative regulation of double-strand break repair via homologous recombination
A/B=157-522 P paracrine signaling
A/B=157-522 P positive regulation of cAMP-mediated signaling
A/B=157-522 P positive regulation of cellular senescence
A/B=157-522 P positive regulation of cGMP-mediated signaling
A/B=157-522 P positive regulation of defense response to virus by host
A/B=157-522 P positive regulation of type I interferon production
A/B=157-522 P regulation of immunoglobulin production
A/B=157-522 P regulation of T cell activation
A/B=157-522 P viral process
A/B=56-130 C cytoplasm
A/B=56-130 C nuclear chromatin
A/B=56-130 C nuclear speck
A/B=56-130 C nucleoplasm
A/B=56-130 C nucleus
A/B=56-130 C transcription regulator complex
A/B=56-130 F calmodulin binding
A/B=56-130 F DNA binding
A/B=56-130 F DNA-binding transcription factor activity, RNA polymerase II-specific
A/B=56-130 F transcription factor binding
A/B=56-130 P anatomical structure morphogenesis
A/B=56-130 P cell differentiation
A/B=56-130 P male sex determination
A/B=56-130 P negative regulation of transcription by RNA polymerase II
A/B=56-130 P positive regulation of gene expression
A/B=56-130 P positive regulation of male gonad development
A/B=56-130 P positive regulation of transcription by RNA polymerase II
A/B=56-130 P positive regulation of transcription, DNA-templated
A/B=56-130 P regulation of transcription, DNA-templated
A/B=56-130 P sex differentiation
Sequences
Download file with secondary structure created by Stride  
6edb.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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