General information
PDB ID 6EM3
Title STATE A ARCHITECTURAL MODEL (NSA1-TAP FLAG-YTM1) - VISUALIZING THE ASSEMBLY PATHWAY OF NUCLEOLAR PRE-60S RIBOSOMES
PDB header RIBOSOME
Date 2017-10-01
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.2
Kind rna
Organism
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complex
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6em3.pdb xF345AJvCeEfGhijLMNOPQSYDKnotB 126 0
Biounits:
6em3.pdb1.pdb xF345AJvCeEfGhijLMNOPQSYDKnotB 126 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Brix Domain Q08235_38-191 5.1e-18 1 CL0458 A 38 191 1   
BOP1NT Domain Q04660_244-397 1.5e-47 1 No_clan B 244 397 1   
Ribos_L4_asso_C Domain P10664_272-348 7e-29 1 No_clan C 272 344 1   
DUF4217 Domain Q03532_425-484 3.6e-17 1 No_clan D 425 481   
Ribosomal_L35Ae Domain P05744_7-101 3.5e-42 1 CL0575 f 7 101 1   
Ribosomal_L30_N Domain P05737_8-79 1.6e-20 1 No_clan F 8 79 1   
Ribosomal_L30 Domain P05737_84-134 1.2e-19 1 No_clan F 84 134 1   
Ribosomal_L7Ae Domain P17076_117-212 1.1e-23 1 CL0101 G 112 212 1   
Ribosomal_L1 Domain P38779_42-287 1.6e-34 1 No_clan K 41 287 6   
RRM_1 Domain P53927_93-163 3.5e-18 1 CL0221 o 93 163 1   
Ribosomal_L22 Domain P05740_17-151 3.1e-25 1 No_clan P 17 151 12   
Ribosomal_L18A Domain P0CX23_4-127 1.8e-53 1 No_clan S 4 127 1   
Ribosomal_L30 Domain P40693_142-194 0.00000000001 1 No_clan t 142 194 6   
Brix Domain P38805_101-269 7.7e-21 1 CL0458 x 100 269   
Ribosomal_L28e Family P10962_5-118 1.2e-40 1 No_clan 3 5 118 1   
Mak16 Family P10962_138-170 0.000000000000093 1 No_clan 3 138 174   
Nop52 Family P35178_4-243 2.9e-66 1 No_clan 4 5 244 1   
Ribosomal_L4 Family P10664_20-261 6.6e-44 1 No_clan C 20 261 1   
Helicase_C Family Q03532_275-379 2.3e-23 1 CL0023 D 275 389   
Ribosomal_L32e Family P38061_14-121 6.9e-47 1 No_clan e 14 121 1   
Ribosomal_L6e Family 9.7e-16 1 No_clan E 107 176 1
Ribosomal_L6e Family 0.00000000000011 1 No_clan E 71 133 1
Ribosomal_L29 Family P0CX84_7-61 5.1e-16 1 CL0346 h 7 61   
Ribosomal_L36e Family O14455_27-99 8.7e-29 1 No_clan i 27 99 1   
Ribosomal_L37e Family P49166_14-54 1.2e-20 1 CL0167 j 15 54 1   
Ebp2 Family P36049_196-261 4e-16 1 No_clan J 196 261   
Ribosomal_L13e Family Q12690_21-128 9.9e-55 1 No_clan L 22 129 1   
Ribosomal_L14e Family P36105_54-128 8.7e-33 1 CL0107 M 54 128 1   
KOW Family 0.00072 0 CL0107 M 17 47
Pescadillo_N Family P53261_13-267 3.1e-103 1 No_clan n 15 358 1   
Ribosomal_L15e Family P05748_2-190 3.3e-44 1 CL0652 N 69 190 1   
BRCT_2 Family P53261_357-437 0.000000065 1 CL0459 n 357 437   
Ribosomal_L13 Family P26784_6-118 0.000000018 1 No_clan O 6 118 1   
Ribosomal_L18 Family P0CX49_15-148 5.3e-66 1 CL0588 Q 15 145 1   
Nop16 Family 1.1e-23 1 No_clan v 66 223 1
Nop16 Family 8.8e-23 1 No_clan v 5 164 12
Ribosomal_L26 Family P05743_9-122 4.6e-36 1 No_clan Y 9 122 12   
KOW Family P05743_52-90 0.000033 1 CL0107 Y 52 90 1   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6em3.pdb1.pdb:   [ download sequences in FASTA format ]
3 (protein): 
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4 (protein): 
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5 (protein): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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e (protein): 
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F (protein): 
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G (protein): 
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h (protein): 
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i (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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n (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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S (protein): 
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t (protein): 
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v (protein): 
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x (protein): 
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Y (protein): 
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1 (rna): 
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2 (rna): 
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6 (rna): 
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