NPIDB: 6EML structure

General information

PDB ID

6EML

Title

CRYO-EM STRUCTURE OF A LATE PRE-40S RIBOSOMAL SUBUNIT FROM SACCHAROMYCES CEREVISIAE

PDB header

RIBOSOME

Date

2017-10-02

Experimental method

ELECTRON MICROSCOPY

Resolution (A)

3.6

Kind

rna

Organism

SACCHAROMYCES CEREVISIAE S288C


Download complex	View in Jmol

Quick Links

PDB	PDBe	MMDB	Jena	OCA
CATH	PDBsum	HSSP	PDBePISA	UniProt
ProteopediA	BIPA
	PRIDB

Composition of PDB entry and biounits
File:	Protein chains:	DNA chains:	RNA chains:	No. of models:	Action:

PDB entry:

pdb6eml.pdb	DBCEFHIKLNPQRSTUVWXYZabcdftgpre		2	0

Biounits:

6eml.pdb1.pdb	DBCEFHIKLNPQRSTUVWXYZabcdftgpre		2	1

Pfam domains
Name:	Type:	Domain:	E-value:	Significance:	Clan:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

Ribosomal_S7	Domain	P26783_72-225	4.5e-32	1	No_clan	B	72	225	2
Ribosomal_S8	Domain	P0C0W1_5-130	5e-24	1	No_clan	b	5	130	2
Ribosomal_L7Ae	Domain	P48589_26-123	1.2e-22	1	CL0101	D	26	123	2
Ribosomal_S19	Domain	Q01855_43-128	1.6e-32	1	No_clan	E	43	128	2
Ribosomal_S27	Domain	P05759_102-147	1.8e-25	1	CL0167	N	102	147	2
Rio2_N	Domain	P40160_8-91	2.4e-29	1	CL0123	r	8	91	2
Ribosomal_S5	Domain	P25443_76-140	1.1e-26	1	CL0196	R	76	140	2
Ribosomal_S5_C	Domain	P25443_159-230	4.9e-24	1	CL0329	R	159	230	2
RS4NT	Domain	P0CX35_3-39	1.5e-19	1	No_clan	S	3	39	2
S4	Domain	P0CX35_42-90	1.6e-08	1	CL0492	S	42	90	2
AARP2CN	Domain	Q07381_234-309	1.5e-21	1	No_clan	t	234	336	2
S4	Domain	O13516_107-153	3.3e-12	1	CL0492	W	107	153	2
Ribosomal_S17	Domain	P0CX47_73-141	8.4e-28	1	CL0021	X	73	141	2
Ribosomal_S13_N	Domain	P05756_2-60	8.1e-28	1	No_clan	Y	2	60	2
Ribosomal_S15	Domain	P05756_70-148	3.2e-15	1	CL0600	Y	70	149	2
Ribosomal_S21e	Family	P0C0V8_1-80	5.8e-40	1	No_clan	a	1	80	2
Ribosom_S12_S23	Family	P0CX29_31-144	2.1e-51	1	CL0021	c	31	144	2
Ribosomal_S17e	Family	P02407_2-126	6.3e-46	1	No_clan	C	2	122	2
Ribosomal_S24e	Family	P0CX31_24-102	6.5e-35	1	No_clan	d	24	102	2
Bystin	Family	P38333_205-465	2.1e-116	1	No_clan	e	205	465	2
Ribosomal_S9	Family	P0CX51_11-143	1.3e-32	1	CL0329	F	11	143	2
Ribosomal_S27e	Family	P35997_28-82	5e-30	1	CL0167	f	28	82	2
Ribosomal_S30	Family	P0CX33_3-61	8.2e-29	1	No_clan	g	3	61	2
Ribosomal_S13	Family	P0CX55_16-131	1.3e-47	1	CL0303	H	16	131	2
Ribosomal_S19e	Family	P07280_5-142	8.8e-54	1	CL0123	I	5	142	2
Ribosomal_S25	Family	Q3E792_42-104	1.3e-24	1	CL0123	K	42	104	2
Ribosomal_S28e	Family	P0C0X0_5-66	1.2e-32	1	CL0021	L	5	66	2
Ribosomal_S2	Family	P32905_111-183	2.9e-14	1	CL0067	P	111	183	2
Ribosomal_S2	Family	P32905_17-116	9.4e-10	1	CL0067	P	17	116	2
Ribosomal_S3Ae	Family	P33442_20-221	7.6e-88	1	No_clan	Q	20	221	2
RIO1	Family	P40160_108-288	3e-35	1	CL0016	r	108	287	2
Ribosomal_S4e	Family	P0CX35_95-169	2.1e-38	1	No_clan	S	95	169	2
40S_S4_C	Family	P0CX35_212-259	3.8e-26	1	No_clan	S	212	259	2
KOW	Family	P0CX35_177-211	3.8e-06	1	CL0107	S	177	211	2
RIBIOP_C	Family	Q07381_486-779	1.2e-106	1	CL0575	t	486	779	2
Ribosomal_S6e	Family	P0CX37_1-126	6e-58	1	No_clan	T	1	126	2
Ribosomal_S7e	Family	P26786_5-187	6.2e-80	1	CL0652	U	5	187	2
Ribosomal_S8e	Family	P0CX39_2-184	1.8e-59	1	No_clan	V	2	184	2
Ribosomal_S17_N	Family	P0CX47_8-71	8.4e-32	1	No_clan	X	8	71	2
Ribosomal_S11	Family	P06367_15-129	3.2e-46	1	CL0267	Z	15	133	2

SCOP domains
No SCOP domains

GO terms
No GO terms

Sequences

Download file with secondary structure created by Stride

6eml.pdb1.pdb: [ download sequences in FASTA format ]

a (protein):