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Composition of PDB entry and biounits
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File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
PDB entry: | |||||
pdb6eml.pdb | DBCEFHIKLNPQRSTUVWXYZabcdftgpre | 2 | 0 |
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Biounits: | |||||
6eml.pdb1.pdb | DBCEFHIKLNPQRSTUVWXYZabcdftgpre | 2 | 1 |
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Pfam domains
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Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Domain | P26783_76-225 | 4.5e-32 | 1 | No_clan | B | 72 | 225 | 2 |
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Domain | P0C0W1_5-130 | 5e-24 | 1 | No_clan | b | 5 | 130 | 2 |
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Domain | P48589_26-123 | 1.2e-22 | 1 |
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D | 26 | 123 | 2 |
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Domain | Q01855_43-128 | 1.6e-32 | 1 | No_clan | E | 43 | 128 | 2 |
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Domain | P05759_102-147 | 1.8e-25 | 1 |
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N | 102 | 147 | 2 |
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Domain | P40160_8-91 | 2.4e-29 | 1 |
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r | 8 | 91 | 2 |
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Domain | P25443_76-140 | 1.1e-26 | 1 |
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R | 76 | 140 | 2 |
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Domain | P25443_159-230 | 4.9e-24 | 1 |
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R | 159 | 230 | 2 |
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Domain | P0CX35_3-39 | 1.5e-19 | 1 | No_clan | S | 3 | 39 | 2 |
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Domain | P0CX35_42-90 | 1.6e-08 | 1 |
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S | 42 | 90 | 2 |
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Domain | Q07381_234-309 | 1.5e-21 | 1 | No_clan | t | 234 | 336 | 2 |
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Domain | O13516_107-153 | 3.3e-12 | 1 |
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W | 107 | 153 | 2 |
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Domain | P0CX47_73-141 | 8.4e-28 | 1 |
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X | 73 | 141 | 2 |
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Domain | P05756_2-60 | 8.1e-28 | 1 | No_clan | Y | 2 | 60 | 2 |
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Domain | P05756_70-149 | 3.2e-15 | 1 |
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Y | 70 | 149 | 2 |
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Family | P0C0V8_1-80 | 5.8e-40 | 1 | No_clan | a | 1 | 80 | 2 |
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Family | P0CX29_31-144 | 2.1e-51 | 1 |
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c | 31 | 144 | 2 |
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Family | P02407_2-126 | 6.3e-46 | 1 | No_clan | C | 2 | 122 | 2 |
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Family | P0CX31_24-102 | 6.5e-35 | 1 | No_clan | d | 24 | 102 | 2 |
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Family | P38333_205-465 | 2.1e-116 | 1 | No_clan | e | 205 | 465 | 2 |
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Family | P0CX51_11-143 | 1.3e-32 | 1 |
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F | 11 | 143 | 2 |
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Family | P35997_28-82 | 5e-30 | 1 |
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f | 28 | 82 | 2 |
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Family | P0CX33_7-61 | 8.2e-29 | 1 | No_clan | g | 3 | 61 | 2 |
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Family | P0CX55_16-131 | 1.3e-47 | 1 |
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H | 16 | 131 | 2 |
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Family | P07280_5-142 | 8.8e-54 | 1 |
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I | 5 | 142 | 2 |
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Family | Q3E792_42-104 | 1.3e-24 | 1 |
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K | 42 | 104 | 2 |
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Family | P0C0X0_5-66 | 1.2e-32 | 1 |
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L | 5 | 66 | 2 |
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Family | P32905_110-183 | 2.9e-14 | 1 |
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P | 111 | 183 | 2 |
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Family | P32905_17-117 | 9.4e-10 | 1 |
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P | 17 | 116 | 2 |
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Family | P33442_20-221 | 7.6e-88 | 1 | No_clan | Q | 20 | 221 | 2 |
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Family | P40160_108-288 | 3e-35 | 1 |
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r | 108 | 287 | 2 |
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Family | P0CX35_95-169 | 2.1e-38 | 1 | No_clan | S | 95 | 169 | 2 |
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Family | P0CX35_212-259 | 3.8e-26 | 1 | No_clan | S | 212 | 259 | 2 |
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Family | P0CX35_177-211 | 3.8e-06 | 1 |
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S | 177 | 211 | 2 |
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Family | Q07381_486-779 | 1.2e-106 | 1 |
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t | 486 | 779 | 2 |
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Family | P0CX37_1-126 | 6e-58 | 1 | No_clan | T | 1 | 126 | 2 |
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Family | P26786_5-187 | 6.2e-80 | 1 |
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U | 5 | 187 | 2 |
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Family | P0CX39_2-184 | 1.8e-59 | 1 | No_clan | V | 2 | 184 | 2 |
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Family | P0CX47_8-71 | 8.4e-32 | 1 | No_clan | X | 8 | 71 | 2 |
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Family | P06367_15-129 | 3.2e-46 | 1 |
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Z | 15 | 133 | 2 |
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SCOP domains
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No SCOP domains | |||||||
GO terms | ||
Protein chains: | GO type: | GO description: |
a=1-87 | C | cytosolic small ribosomal subunit |
a=1-87 | F | structural constituent of ribosome |
a=1-87 | P | cytoplasmic translation |
a=1-87 | P | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
a=1-87 | P | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
b=1-130 | C | cytosolic small ribosomal subunit |
b=1-130 | F | structural constituent of ribosome |
b=1-130 | P | cytoplasmic translation |
B=1-225 | C | 90S preribosome |
B=1-225 | C | cytosolic small ribosomal subunit |
B=1-225 | C | ribosome |
B=1-225 | F | mRNA binding |
B=1-225 | F | rRNA binding |
B=1-225 | F | structural constituent of ribosome |
B=1-225 | P | cytoplasmic translation |
B=1-225 | P | regulation of translational fidelity |
B=1-225 | P | ribosomal small subunit assembly |
B=1-225 | P | rRNA export from nucleus |
B=1-225 | P | translation |
C=1-136 | C | cytosolic small ribosomal subunit |
C=1-136 | F | structural constituent of ribosome |
C=1-136 | P | cytoplasmic translation |
C=1-136 | P | ribosomal small subunit assembly |
c=1-145 | C | cytosolic small ribosomal subunit |
c=1-145 | C | ribosome |
c=1-145 | F | structural constituent of ribosome |
c=1-145 | P | maintenance of translational fidelity |
c=1-145 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
c=1-145 | P | regulation of translational fidelity |
c=1-145 | P | translation |
d=1-135 | C | cytosolic small ribosomal subunit |
d=1-135 | C | mitochondrion |
d=1-135 | F | structural constituent of ribosome |
d=1-135 | P | cytoplasmic translation |
d=1-135 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
D=1-143 | C | cytosolic small ribosomal subunit |
D=1-143 | F | structural constituent of ribosome |
D=1-143 | P | cytoplasmic translation |
E=1-142 | C | cytosolic small ribosomal subunit |
E=1-142 | F | RNA binding |
E=1-142 | F | structural constituent of ribosome |
E=1-142 | P | cytoplasmic translation |
E=1-142 | P | ribosomal small subunit assembly |
E=1-142 | P | rRNA export from nucleus |
e=1-483 | C | 90S preribosome |
e=1-483 | C | cytoplasm |
e=1-483 | C | nucleolus |
e=1-483 | C | nucleus |
e=1-483 | C | preribosome, small subunit precursor |
e=1-483 | F | snoRNA binding |
e=1-483 | P | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
e=1-483 | P | poly(A)+ mRNA export from nucleus |
e=1-483 | P | rRNA processing |
F=1-143 | C | 90S preribosome |
F=1-143 | C | cytosolic small ribosomal subunit |
F=1-143 | C | small ribosomal subunit |
F=1-143 | F | RNA binding |
F=1-143 | F | structural constituent of ribosome |
F=1-143 | P | cytoplasmic translation |
F=1-143 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
f=1-82 | C | cytoplasm |
f=1-82 | C | cytosolic small ribosomal subunit |
f=1-82 | F | metal ion binding |
f=1-82 | F | RNA binding |
f=1-82 | F | structural constituent of ribosome |
f=1-82 | P | cytoplasmic translation |
f=1-82 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
f=1-82 | P | ribosomal small subunit assembly |
g=1-63 | C | cytoplasmic stress granule |
g=1-63 | C | cytosolic small ribosomal subunit |
g=1-63 | F | structural constituent of ribosome |
g=1-63 | P | cytoplasmic translation |
H=1-146 | C | cytoplasm |
H=1-146 | C | cytosol |
H=1-146 | C | cytosolic small ribosomal subunit |
H=1-146 | C | mitochondrion |
H=1-146 | C | small ribosomal subunit |
H=1-146 | F | rRNA binding |
H=1-146 | F | structural constituent of ribosome |
H=1-146 | P | cytoplasmic translation |
H=1-146 | P | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
H=1-146 | P | rRNA export from nucleus |
I=1-144 | C | cytosolic small ribosomal subunit |
I=1-144 | F | RNA binding |
I=1-144 | F | structural constituent of ribosome |
I=1-144 | P | cytoplasmic translation |
I=1-144 | P | ribosomal small subunit assembly |
I=1-144 | P | ribosomal small subunit biogenesis |
I=1-144 | P | rRNA export from nucleus |
K=1-108 | C | cytosolic small ribosomal subunit |
K=1-108 | F | structural constituent of ribosome |
K=1-108 | P | cytoplasmic translation |
L=1-67 | C | cytosolic small ribosomal subunit |
L=1-67 | F | structural constituent of ribosome |
L=1-67 | P | cytoplasmic translation |
L=1-67 | P | maturation of SSU-rRNA |
L=1-67 | P | positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay |
L=1-67 | P | ribosomal small subunit assembly |
L=1-67 | P | rRNA export from nucleus |
N=1-152 | C | cytoplasm |
N=1-152 | C | cytosolic small ribosomal subunit |
N=1-152 | C | nucleus |
N=1-152 | F | metal ion binding |
N=1-152 | F | protein tag |
N=1-152 | F | structural constituent of ribosome |
N=1-152 | F | ubiquitin protein ligase binding |
N=1-152 | P | cytoplasmic translation |
N=1-152 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) |
N=1-152 | P | modification-dependent protein catabolic process |
N=1-152 | P | protein ubiquitination |
N=1-152 | P | ribosomal small subunit assembly |
N=1-152 | P | ribosome biogenesis |
P=1-252 | C | 90S preribosome |
P=1-252 | C | cytoplasmic stress granule |
P=1-252 | C | cytosolic small ribosomal subunit |
P=1-252 | F | structural constituent of ribosome |
P=1-252 | P | cytoplasmic translation |
P=1-252 | P | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
P=1-252 | P | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
P=1-252 | P | ribosomal small subunit assembly |
P=1-252 | P | rRNA export from nucleus |
P=1-252 | P | translation |
p=1-274 | C | 90S preribosome |
p=1-274 | C | cytoplasm |
p=1-274 | C | nucleolus |
p=1-274 | C | nucleus |
p=1-274 | F | RNA binding |
p=1-274 | F | unfolded protein binding |
p=1-274 | P | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
p=1-274 | P | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
p=1-274 | P | proteasome assembly |
Q=1-255 | C | 90S preribosome |
Q=1-255 | C | cytosol |
Q=1-255 | C | cytosolic small ribosomal subunit |
Q=1-255 | F | structural constituent of ribosome |
Q=1-255 | P | cytoplasmic translation |
Q=1-255 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
R=1-254 | C | cytosolic small ribosomal subunit |
R=1-254 | C | nucleolus |
R=1-254 | C | nucleoplasm |
R=1-254 | C | small-subunit processome |
R=1-254 | F | small ribosomal subunit rRNA binding |
R=1-254 | F | structural constituent of ribosome |
R=1-254 | P | positive regulation of translational fidelity |
R=1-254 | P | rRNA export from nucleus |
R=1-254 | P | rRNA methylation |
R=1-254 | P | translation |
r=1-425 | C | cytoplasm |
r=1-425 | C | cytoplasmic stress granule |
r=1-425 | C | cytosol |
r=1-425 | C | nucleus |
r=1-425 | C | preribosome, small subunit precursor |
r=1-425 | F | ATP binding |
r=1-425 | F | metal ion binding |
r=1-425 | F | protein kinase activity |
r=1-425 | F | protein serine/threonine kinase activity |
r=1-425 | P | maturation of SSU-rRNA |
r=1-425 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
r=1-425 | P | positive regulation of RNA import into nucleus |
S=1-261 | C | 90S preribosome |
S=1-261 | C | cytoplasm |
S=1-261 | C | cytosolic small ribosomal subunit |
S=1-261 | F | RNA binding |
S=1-261 | F | rRNA binding |
S=1-261 | F | structural constituent of ribosome |
S=1-261 | P | cytoplasmic translation |
S=1-261 | P | translation |
T=1-236 | C | 90S preribosome |
T=1-236 | C | cytosolic small ribosomal subunit |
T=1-236 | C | nucleolus |
T=1-236 | C | nucleoplasm |
T=1-236 | C | small-subunit processome |
T=1-236 | F | structural constituent of ribosome |
T=1-236 | P | cytoplasmic translation |
T=1-236 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
T=1-236 | P | rRNA methylation |
t=1-788 | C | 90S preribosome |
t=1-788 | C | cytoplasm |
t=1-788 | C | nucleolus |
t=1-788 | C | nucleus |
t=1-788 | C | preribosome, small subunit precursor |
t=1-788 | F | GTP binding |
t=1-788 | F | GTPase activity |
t=1-788 | F | ribonucleoprotein complex binding |
t=1-788 | F | U3 snoRNA binding |
t=1-788 | P | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
t=1-788 | P | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
t=1-788 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
U=1-190 | C | 90S preribosome |
U=1-190 | C | cytosolic small ribosomal subunit |
U=1-190 | C | nucleolus |
U=1-190 | C | nucleoplasm |
U=1-190 | C | small-subunit processome |
U=1-190 | F | structural constituent of ribosome |
U=1-190 | P | cytoplasmic translation |
U=1-190 | P | ribosomal small subunit biogenesis |
U=1-190 | P | ribosome biogenesis |
U=1-190 | P | rRNA methylation |
U=1-190 | P | rRNA processing |
V=1-200 | C | 90S preribosome |
V=1-200 | C | cytosolic small ribosomal subunit |
V=1-200 | F | structural constituent of ribosome |
V=1-200 | P | cytoplasmic translation |
V=1-200 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
W=1-197 | C | 90S preribosome |
W=1-197 | C | cytoplasm |
W=1-197 | C | cytosolic small ribosomal subunit |
W=1-197 | C | nucleolus |
W=1-197 | C | nucleoplasm |
W=1-197 | C | small ribosomal subunit |
W=1-197 | C | small-subunit processome |
W=1-197 | F | rRNA binding |
W=1-197 | F | structural constituent of ribosome |
W=1-197 | P | cytoplasmic translation |
W=1-197 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
W=1-197 | P | positive regulation of translational fidelity |
W=1-197 | P | rRNA methylation |
X=1-156 | C | 90S preribosome |
X=1-156 | C | cytosolic small ribosomal subunit |
X=1-156 | F | rRNA binding |
X=1-156 | F | structural constituent of ribosome |
X=1-156 | P | cytoplasmic translation |
X=1-156 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
X=1-156 | P | ribosomal small subunit assembly |
Y=1-151 | C | 90S preribosome |
Y=1-151 | C | cytosolic small ribosomal subunit |
Y=1-151 | C | nucleolus |
Y=1-151 | F | small ribosomal subunit rRNA binding |
Y=1-151 | F | structural constituent of ribosome |
Y=1-151 | P | cytoplasmic translation |
Y=1-151 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
Z=1-137 | C | 90S preribosome |
Z=1-137 | C | cytosolic small ribosomal subunit |
Z=1-137 | C | nucleolus |
Z=1-137 | C | nucleoplasm |
Z=1-137 | C | small-subunit processome |
Z=1-137 | F | mRNA 5'-UTR binding |
Z=1-137 | F | mRNA binding |
Z=1-137 | F | small ribosomal subunit rRNA binding |
Z=1-137 | F | structural constituent of ribosome |
Z=1-137 | P | cytoplasmic translation |
Z=1-137 | P | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
Z=1-137 | P | ribosomal small subunit assembly |
Z=1-137 | P | rRNA methylation |
Z=1-137 | P | translation |
Sequences
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6eml.pdb1.pdb:
[
download sequences in FASTA format
]
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a (protein):
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b (protein):
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c (protein):
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d (protein):
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e (protein):
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f (protein):
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g (protein):
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H (protein):
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I (protein):
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K (protein):
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L (protein):
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N (protein):
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p (protein):
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Q (protein):
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R (protein):
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S (protein):
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T (protein):
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U (protein):
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V (protein):
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W (protein):
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X (protein):
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Y (protein):
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Z (protein):
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2 (rna):
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