NPIDB: 6ERP structure

General information

PDB ID

6ERP

Title

STRUCTURE OF THE HUMAN MITOCHONDRIAL TRANSCRIPTION INITIATION COMPLEX AT THE LSP PROMOTER

PDB header

TRANSCRIPTION

Date

2017-10-18

Experimental method

X-RAY DIFFRACTION

Resolution (A)

4.5

Kind

dna

Organism

HOMO SAPIENS


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PDB	PDBe	MMDB	Jena	OCA
CATH	PDBsum	HSSP	PDBePISA	UniProt
ProteopediA	BIPA

Composition of PDB entry and biounits
File:	Protein chains:	DNA chains:	RNA chains:	No. of models:	Action:

PDB entry:

pdb6erp.pdb	CGABFJ	DEHI		0

Biounits:

6erp.pdb1.pdb	CAF	DE		1
6erp.pdb2.pdb	GBJ	HI		1

Pfam domains
Name:	Type:	Domain:	E-value:	Significance:	Clan:	Prot. chain:	Start res.:	End res.:	Nuc. chains:	Int. mode:	Action:

RPOL_N	Domain	O00411_410-704	1.9e-53	1	No_clan	A	410	704	DE	L-Mj L-Mn
RPOL_N	Domain	O00411_410-704	3.3e-51	1	No_clan	B	410	704	IH	S-Bb L-Mj L-Mn
HMG_box	Domain	Q00059_50-118	8.5e-21	1	CL0114	C	50	118	DE	H-Bb H-Mj H-Mn L-Bb L-Mn
HMG_box_2	Domain	Q00059_152-219	7e-14	1	CL0114	C	152	219	DE	H-Bb H-Mj H-Mn L-Bb L-Mn
RrnaAD	Domain	Q9H5Q4_72-379	6.3e-19	1	CL0063	F	80	379	D	H-Bb
HMG_box	Domain	Q00059_50-118	8.5e-21	1	CL0114	G	50	118	HI	H-Bb H-Mn L-Bb L-Mj L-Mn
HMG_box_2	Domain	Q00059_152-219	7e-14	1	CL0114	G	152	219	HI	L-Bb L-Mn
RrnaAD	Domain	Q9H5Q4_72-379	6.3e-19	1	CL0063	J	80	379	HI	H-Bb L-Bb
RNA_pol	Family	O00411_831-1230	5.2e-159	1	No_clan	A	831	1230	E	S-Bb L-Bb L-Mj
RNA_pol	Family	O00411_831-1230	5.1e-159	1	No_clan	B	831	1230	HI	H-Bb S-Bb L-Bb L-Mj

SCOP domains
No SCOP domains

GO terms
Protein chains:	GO type:	GO description:
A/B=105-1230	C	mitochondrial DNA-directed RNA polymerase complex
A/B=105-1230	C	mitochondrial matrix
A/B=105-1230	C	mitochondrial nucleoid
A/B=105-1230	C	mitochondrion
A/B=105-1230	C	protein-containing complex
A/B=105-1230	F	DNA-directed 5'-3' RNA polymerase activity
A/B=105-1230	F	mitochondrial promoter sequence-specific DNA binding
A/B=105-1230	F	RNA binding
A/B=105-1230	F	sequence-specific DNA binding
A/B=105-1230	P	mitochondrial transcription
A/B=105-1230	P	mitochondrion organization
A/B=105-1230	P	transcription initiation from mitochondrial promoter
C/G=43-245	C	cytosol
C/G=43-245	C	mitochondrial matrix
C/G=43-245	C	mitochondrial nucleoid
C/G=43-245	C	mitochondrion
C/G=43-245	C	nuclear chromatin
C/G=43-245	C	nucleus
C/G=43-245	C	protein-containing complex
C/G=43-245	F	chromatin binding
C/G=43-245	F	DNA binding, bending
C/G=43-245	F	heat shock protein binding
C/G=43-245	F	mitochondrial promoter sequence-specific DNA binding
C/G=43-245	F	mitochondrial sequence-specific DNA-binding transcription factor activity
C/G=43-245	F	RNA binding
C/G=43-245	F	sequence-specific DNA binding
C/G=43-245	F	transcription coactivator binding
C/G=43-245	F	transcription factor binding
C/G=43-245	P	chromatin remodeling
C/G=43-245	P	mitochondrial respiratory chain complex assembly
C/G=43-245	P	mitochondrial transcription
C/G=43-245	P	mitochondrion organization
C/G=43-245	P	positive regulation of transcription, DNA-templated
C/G=43-245	P	regulation of transcription by RNA polymerase II
C/G=43-245	P	regulation of transcription, DNA-templated
C/G=43-245	P	transcription initiation from mitochondrial promoter
F/J=21-396	C	mitochondrial matrix
F/J=21-396	C	mitochondrial nucleoid
F/J=21-396	C	mitochondrion
F/J=21-396	F	mitochondrial sequence-specific DNA-binding transcription factor activity
F/J=21-396	F	RNA binding
F/J=21-396	F	rRNA (adenine-N6,N6-)-dimethyltransferase activity
F/J=21-396	F	transcription coregulator activity
F/J=21-396	P	mitochondrial transcription
F/J=21-396	P	mitochondrion organization
F/J=21-396	P	rRNA methylation
F/J=21-396	P	transcription initiation from mitochondrial promoter

Sequences

Download file with secondary structure created by Stride

6erp.pdb1.pdb: [ download sequences in FASTA format ]

D (dna):