General information
PDB ID 6F40
Title RNA POLYMERASE III OPEN COMPLEX
PDB header TRANSCRIPTION
Date 2017-11-29
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.7
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6f40.pdb ABCDEFGHIJKLMNOPQUVW XY 0
Biounits:
6f40.pdb1.pdb ABCDEFGHIJKLMNOPQUVW XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_1 Domain P04051_10-368 7.7e-79 1 No_clan A 10 368   
RNA_pol_Rpb1_2 Domain P04051_370-537 7.2e-76 1 No_clan A 370 537   
RNA_pol_Rpb1_5 Domain P04051_855-1384 1.7e-61 1 No_clan A 855 1384 Y   
RNA_pol_Rpb1_3 Domain P04051_540-717 1.4e-38 1 No_clan A 540 717   
RNA_pol_Rpb1_4 Domain P04051_742-848 4.3e-30 1 No_clan A 742 848   
RNA_pol_Rpb2_6 Domain P22276_684-1056 9.9e-125 1 CL0410 B 684 1056   
RNA_pol_Rpb2_2 Domain P22276_201-378 2.9e-43 1 No_clan B 201 378   
RNA_pol_Rpb2_7 Domain P22276_1058-1144 1.6e-33 1 No_clan B 1058 1144   
RNA_pol_Rpb2_4 Domain P22276_555-616 8.5e-25 1 No_clan B 555 616   
RNA_pol_Rpb2_3 Domain P22276_456-520 3.9e-18 1 No_clan B 456 520 XY   
RNA_pol_Rpb2_5 Domain P22276_637-677 4.4e-10 1 No_clan B 637 677   
RNA_pol_A_bac Domain P07703_83-220 6.6e-30 1 No_clan C 83 220   
RNA_pol_L Domain P07703_53-325 1.6e-20 1 CL0509 C 53 325   
RNA_pol_Rpb5_C Domain P20434_142-214 1.6e-31 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 1.1e-29 1 CL0236 E 6 100   
RNA_pol_Rbc25 Domain P35718_79-211 9e-31 1 CL0021 G 79 191   
SHS2_Rpb7-N Domain P35718_8-77 5.1e-20 1 CL0319 G 8 77   
RNA_POL_M_15KD Domain Q04307_2-38 4.4e-17 1 CL0167 I 2 34   
RNA_pol_N Domain P22139_1-60 6.1e-30 1 No_clan J 1 60   
RNA_pol_L_2 Domain P28000_60-134 3.8e-33 1 CL0509 K 60 134   
DNA_RNApol_7kD Domain P40422_29-60 1.8e-16 1 CL0167 L 29 60   
HTH_9 Domain P32349_47-109 5.8e-21 1 CL0123 O 47 109   
TBP Domain P13393_154-237 4.3e-33 1 CL0407 U 154 237 XY  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P13393_64-146 1.3e-32 1 CL0407 U 64 146 YX  S-Bb S-Mn L-Bb L-Mn 
TFIIB Domain P29056_182-255 1.5e-28 1 CL0065 V 182 255 Y  H-Bb 
TFIIB Domain P29056_87-157 8.4e-26 1 CL0065 V 87 157 X  H-Bb L-Bb 
TF_Zn_Ribbon Domain P29056_2-39 1.2e-12 1 CL0167 V 2 78 X  H-Bb H-Mj 
Myb_DNA-bind_7 Domain 2.4e-25 1 CL0123 W 410 497 X
RNA_pol_Rpb2_1 Family P22276_56-431 7e-63 1 No_clan B 56 431   
RNA_pol_Rpb4 Family P47076_10-161 3.1e-33 1 CL0426 D 10 161   
RNA_pol_Rpb6 Family P20435_79-132 7e-18 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 9.4e-45 1 CL0021 H 7 146   
Sin_N Family P36121_71-262 5.9e-11 1 No_clan M 71 242   
RNA_pol_Rpc4 Family P25441_301-422 1.1e-16 1 No_clan N 360 422   
RNA_pol_Rpc82 Family 6.9e-48 1 No_clan O 189 450
RNA_pol_Rpc82 Family 2.6e-09 1 No_clan O 371 487
RNA_pol_Rpc34 Family P32910_11-315 1.5e-63 1 CL0123 P 11 220   
RNA_pol_3_Rpc31 Family P17890_36-70 1.3e-06 0 No_clan Q 36 70   
BRF1 Family P29056_463-512 3.8e-13 1 No_clan V 463 510   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6f40.pdb1.pdb:   [ download sequences in FASTA format ]
X (dna): 
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Y (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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