General information
PDB ID 6F44
Title RNA POLYMERASE III CLOSED COMPLEX CC2.
PDB header TRANSCRIPTION
Date 2017-11-29
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.2
Kind dna
Organism SACCHAROMYCES CEREVISIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6f44.pdb ABCDEFGHIJKLMNOPQUVW XY 0
Biounits:
6f44.pdb1.pdb ABCDEFGHIJKLMNOPQUVW XY 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_Rpb1_1 Domain P04051_10-368 8.9e-79 1 No_clan A 10 368 X   
RNA_pol_Rpb1_2 Domain P04051_370-537 8.2e-76 1 No_clan A 370 537   
RNA_pol_Rpb1_5 Domain P04051_855-1384 2e-61 1 No_clan A 855 1384   
RNA_pol_Rpb1_3 Domain P04051_540-717 3.2e-38 1 No_clan A 540 717   
RNA_pol_Rpb1_4 Domain P04051_742-848 5.7e-30 1 No_clan A 742 848   
RNA_pol_Rpb2_6 Domain P22276_684-1056 7.6e-125 1 CL0410 B 684 1056   
RNA_pol_Rpb2_2 Domain P22276_201-378 3.3e-43 1 No_clan B 201 378   
RNA_pol_Rpb2_7 Domain P22276_1058-1144 1.6e-33 1 No_clan B 1058 1144   
RNA_pol_Rpb2_4 Domain P22276_555-616 3e-24 1 No_clan B 555 616   
RNA_pol_Rpb2_3 Domain P22276_456-520 2.7e-17 1 No_clan B 456 520   
RNA_pol_Rpb2_5 Domain P22276_637-677 3.1e-08 1 No_clan B 637 677   
RNA_pol_A_bac Domain P07703_83-220 7.6e-30 1 No_clan C 83 220   
RNA_pol_L Domain P07703_53-325 5e-23 1 CL0509 C 53 325   
RNA_pol_Rpb5_C Domain P20434_142-214 1.4e-30 1 No_clan E 142 214   
RNA_pol_Rpb5_N Domain P20434_6-100 3.3e-29 1 CL0236 E 6 100   
RNA_pol_Rbc25 Domain P35718_83-211 1.2e-28 1 CL0021 G 83 192   
SHS2_Rpb7-N Domain P35718_8-64 1.1e-12 1 CL0319 G 8 64   
RNA_POL_M_15KD Domain Q04307_2-38 5e-17 1 CL0167 I 2 34   
RNA_pol_N Domain P22139_2-60 9e-29 1 No_clan J 2 60   
RNA_pol_L_2 Domain P28000_60-134 3e-34 1 CL0509 K 60 134   
DNA_RNApol_7kD Domain P40422_29-60 9.6e-17 1 CL0167 L 29 60   
HTH_9 Domain P32349_47-109 6.7e-21 1 CL0123 O 47 109   
TBP Domain P13393_154-237 6e-33 1 CL0407 U 154 237 XY  S-Bb S-Mn L-Bb L-Mn 
TBP Domain P13393_64-146 6.8e-33 1 CL0407 U 64 146 XY  S-Bb S-Mn L-Bb 
TFIIB Domain P29056_171-265 5.5e-33 1 CL0065 V 171 265 Y  H-Bb L-Bb 
TFIIB Domain P29056_76-167 3.3e-30 1 CL0065 V 76 167 XY  H-Bb L-Bb 
BRF1 Domain P29056_463-512 3.8e-13 1 No_clan V 463 510   
TF_Zn_Ribbon Domain P29056_2-41 1.4e-12 1 CL0167 V 2 78 X  H-Bb 
Myb_DNA-bind_7 Domain P46678_67-154 1.6e-26 1 CL0123 W 410 497 XY  H-Bb L-Bb 
RNA_pol_Rpb2_1 Family P22276_56-431 8e-63 1 No_clan B 56 431   
RNA_pol_Rpb4 Family P47076_10-161 2.3e-32 1 CL0426 D 10 161   
RNA_pol_Rpb6 Family P20435_79-132 2.6e-14 1 No_clan F 79 132   
RNA_pol_Rpb8 Family P20436_7-146 1.9e-45 1 CL0021 H 7 146   
RPC5 Family P36121_71-262 2.2e-11 1 CL0662 M 71 240   
RNA_pol_Rpc4 Family P25441_301-422 3.3e-16 1 CL0662 N 360 422   
RNA_pol_Rpc82 Family P32349_189-487 7.9e-48 1 CL0123 O 189 450   
RNA_pol_Rpc34 Family P32910_165-315 4.3e-13 1 CL0123 P 188 295   
RNA_pol_3_Rpc31 Family P17890_36-70 1.9e-06 0 No_clan Q 36 70   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-1460 C nucleoplasm
A=1-1460 C RNA polymerase III complex
A=1-1460 F DNA binding
A=1-1460 F DNA-directed 5'-3' RNA polymerase activity
A=1-1460 F metal ion binding
A=1-1460 P termination of RNA polymerase III transcription
A=1-1460 P tRNA transcription by RNA polymerase III
B=1-1149 C nucleoplasm
B=1-1149 C RNA polymerase III complex
B=1-1149 F DNA binding
B=1-1149 F DNA-directed 5'-3' RNA polymerase activity
B=1-1149 F metal ion binding
B=1-1149 F ribonucleoside binding
B=1-1149 P termination of RNA polymerase III transcription
B=1-1149 P tRNA transcription by RNA polymerase III
C=1-335 C nucleoplasm
C=1-335 C RNA polymerase I complex
C=1-335 C RNA polymerase III complex
C=1-335 F DNA binding
C=1-335 F protein dimerization activity
C=1-335 F RNA polymerase I activity
C=1-335 P ribosome biogenesis
C=1-335 P termination of RNA polymerase III transcription
C=1-335 P transcription by RNA polymerase I
C=1-335 P transposon integration
C=1-335 P tRNA transcription by RNA polymerase III
D=1-161 C cytosol
D=1-161 C nucleoplasm
D=1-161 C nucleus
D=1-161 C RNA polymerase III complex
D=1-161 F DNA-directed 5'-3' RNA polymerase activity
D=1-161 F nucleotide binding
D=1-161 P termination of RNA polymerase III transcription
D=1-161 P transcription initiation from RNA polymerase III promoter
D=1-161 P tRNA transcription by RNA polymerase III
E=1-215 C host cell nucleus
E=1-215 C nucleoplasm
E=1-215 C RNA polymerase I complex
E=1-215 C RNA polymerase II, core complex
E=1-215 C RNA polymerase III complex
E=1-215 F DNA binding
E=1-215 F RNA polymerase I activity
E=1-215 P ribosome biogenesis
E=1-215 P termination of RNA polymerase III transcription
E=1-215 P transcription by RNA polymerase I
E=1-215 P transcription by RNA polymerase II
E=1-215 P transcription by RNA polymerase III
E=1-215 P transcription, RNA-templated
E=1-215 P tRNA transcription by RNA polymerase III
F=1-155 C cytoplasm
F=1-155 C nucleoplasm
F=1-155 C RNA polymerase I complex
F=1-155 C RNA polymerase II, core complex
F=1-155 C RNA polymerase III complex
F=1-155 F DNA binding
F=1-155 F RNA polymerase I activity
F=1-155 P ribosome biogenesis
F=1-155 P termination of RNA polymerase III transcription
F=1-155 P transcription by RNA polymerase I
F=1-155 P transcription by RNA polymerase II
F=1-155 P transcription by RNA polymerase III
F=1-155 P transcription, RNA-templated
F=1-155 P tRNA transcription by RNA polymerase III
G=1-212 C nucleoplasm
G=1-212 C RNA polymerase III complex
G=1-212 F DNA binding
G=1-212 F DNA-directed 5'-3' RNA polymerase activity
G=1-212 P termination of RNA polymerase III transcription
G=1-212 P transcription initiation from RNA polymerase III promoter
G=1-212 P tRNA transcription by RNA polymerase III
H=1-146 C nucleoplasm
H=1-146 C RNA polymerase I complex
H=1-146 C RNA polymerase II, core complex
H=1-146 C RNA polymerase III complex
H=1-146 F DNA binding
H=1-146 F RNA polymerase I activity
H=1-146 P ribosome biogenesis
H=1-146 P termination of RNA polymerase III transcription
H=1-146 P transcription by RNA polymerase I
H=1-146 P transcription by RNA polymerase II
H=1-146 P transcription by RNA polymerase III
H=1-146 P transcription, RNA-templated
H=1-146 P tRNA transcription by RNA polymerase III
I=1-110 C nucleolus
I=1-110 C nucleoplasm
I=1-110 C RNA polymerase III complex
I=1-110 F DNA-directed 5'-3' RNA polymerase activity
I=1-110 F nucleic acid binding
I=1-110 F zinc ion binding
I=1-110 P termination of RNA polymerase III transcription
I=1-110 P tRNA 3'-trailer cleavage
I=1-110 P tRNA transcription by RNA polymerase III
J=1-70 C nucleoplasm
J=1-70 C RNA polymerase I complex
J=1-70 C RNA polymerase II, core complex
J=1-70 C RNA polymerase III complex
J=1-70 F DNA binding
J=1-70 F RNA polymerase I activity
J=1-70 F zinc ion binding
J=1-70 P ribosome biogenesis
J=1-70 P termination of RNA polymerase III transcription
J=1-70 P transcription by RNA polymerase I
J=1-70 P transcription by RNA polymerase II
J=1-70 P transcription by RNA polymerase III
J=1-70 P transcription, RNA-templated
J=1-70 P tRNA transcription by RNA polymerase III
K=1-142 C nucleoplasm
K=1-142 C RNA polymerase I complex
K=1-142 C RNA polymerase III complex
K=1-142 F DNA binding
K=1-142 F protein dimerization activity
K=1-142 F RNA polymerase I activity
K=1-142 P ribosome biogenesis
K=1-142 P termination of RNA polymerase III transcription
K=1-142 P transcription by RNA polymerase I
K=1-142 P tRNA transcription by RNA polymerase III
L=1-70 C cytoplasm
L=1-70 C nucleolus
L=1-70 C nucleoplasm
L=1-70 C nucleus
L=1-70 C RNA polymerase I complex
L=1-70 C RNA polymerase II, core complex
L=1-70 C RNA polymerase III complex
L=1-70 F DNA binding
L=1-70 F RNA polymerase I activity
L=1-70 F zinc ion binding
L=1-70 P ribosome biogenesis
L=1-70 P termination of RNA polymerase III transcription
L=1-70 P transcription by RNA polymerase I
L=1-70 P transcription by RNA polymerase II
L=1-70 P transcription by RNA polymerase III
L=1-70 P transcription, RNA-templated
L=1-70 P tRNA transcription by RNA polymerase III
M=1-282 C RNA polymerase III complex
M=1-282 F DNA-directed 5'-3' RNA polymerase activity
M=1-282 P tRNA transcription by RNA polymerase III
N=1-422 C nucleoplasm
N=1-422 C RNA polymerase III complex
N=1-422 F DNA binding
N=1-422 F DNA-directed 5'-3' RNA polymerase activity
N=1-422 P termination of RNA polymerase III transcription
N=1-422 P tRNA transcription by RNA polymerase III
O=1-654 C cytoplasm
O=1-654 C nucleoplasm
O=1-654 C RNA polymerase III complex
O=1-654 F DNA-directed 5'-3' RNA polymerase activity
O=1-654 F single-stranded DNA binding
O=1-654 P termination of RNA polymerase III transcription
O=1-654 P tRNA transcription by RNA polymerase III
P=1-317 C cytoplasm
P=1-317 C mitochondrion
P=1-317 C nucleoplasm
P=1-317 C nucleus
P=1-317 C RNA polymerase III complex
P=1-317 F DNA-directed 5'-3' RNA polymerase activity
P=1-317 P termination of RNA polymerase III transcription
P=1-317 P tRNA transcription by RNA polymerase III
Q=1-251 C nucleoplasm
Q=1-251 C RNA polymerase III complex
Q=1-251 F DNA binding
Q=1-251 F DNA-directed 5'-3' RNA polymerase activity
Q=1-251 P termination of RNA polymerase III transcription
Q=1-251 P transcription initiation from RNA polymerase III promoter
Q=1-251 P tRNA transcription by RNA polymerase III
U=1-240 C nucleoplasm
U=1-240 C nucleus
U=1-240 C protein-containing complex
U=1-240 C transcription factor TFIIA complex
U=1-240 C transcription factor TFIID complex
U=1-240 C transcription factor TFIIIB complex
U=1-240 C transcription regulator complex
U=1-240 F chromatin binding
U=1-240 F disordered domain specific binding
U=1-240 F DNA binding, bending
U=1-240 F DNA-binding transcription factor activity
U=1-240 F RNA polymerase I general transcription initiation factor binding
U=1-240 F RNA polymerase II activating transcription factor binding
U=1-240 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
U=1-240 F RNA polymerase II core promoter sequence-specific DNA binding
U=1-240 F RNA polymerase II general transcription initiation factor activity
U=1-240 F RNA polymerase III general transcription initiation factor activity
U=1-240 F RNA polymerase III transcription regulatory region sequence-specific DNA binding
U=1-240 F TFIIA-class transcription factor complex binding
U=1-240 F transcription factor binding
U=1-240 P nucleolar large rRNA transcription by RNA polymerase I
U=1-240 P RNA polymerase I preinitiation complex assembly
U=1-240 P RNA polymerase II preinitiation complex assembly
U=1-240 P RNA polymerase III preinitiation complex assembly
U=1-240 P transcription by RNA polymerase II
U=1-240 P transposon integration
V=1-596 C nucleoplasm
V=1-596 C nucleus
V=1-596 C transcription factor TFIIIB complex
V=1-596 F DNA binding
V=1-596 F metal ion binding
V=1-596 F RNA polymerase III core binding
V=1-596 F RNA polymerase III general transcription initiation factor activity
V=1-596 F RNA polymerase III type 3 promoter sequence-specific DNA binding
V=1-596 F TBP-class protein binding
V=1-596 F TFIIIC-class transcription factor complex binding
V=1-596 F transcription factor binding
V=1-596 P DNA-templated transcription open complex formation
V=1-596 P DNA-templated transcription, initiation
V=1-596 P RNA polymerase III preinitiation complex assembly
V=1-596 P transposon integration
W=1-594 C nucleoplasm
W=1-594 C transcription factor TFIIIB complex
W=1-594 F RNA polymerase III general transcription initiation factor activity
W=1-594 F TFIIIC-class transcription factor complex binding
W=1-594 P DNA-templated transcription open complex formation
W=1-594 P positive regulation of transposon integration
W=1-594 P regulation of transcription, DNA-templated
W=1-594 P RNA polymerase III preinitiation complex assembly
Sequences
Download file with secondary structure created by Stride  
6f44.pdb1.pdb:   [ download sequences in FASTA format ]
X (dna): 
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Y (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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