General information
PDB ID 6HB4
Title TFAM IN COMPLEX WITH SITE-Y
PDB header DNA BINDING PROTEIN
Date 2018-08-09
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.05
Kind dna
Organism HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6hb4.pdb ADGJ BCEFHIKL 0
Biounits:
6hb4.pdb1.pdb A BC 1
6hb4.pdb2.pdb D EF 1
6hb4.pdb3.pdb G HI 1
6hb4.pdb4.pdb J KL 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
HMG_box Domain Q00059_50-118 9e-21 1 CL0114 A 50 118 BC  H-Bb H-Mj H-Mn L-Bb 
HMG_box_2 Domain Q00059_152-219 7.4e-14 1 CL0114 A 152 219 BC  H-Bb H-Mj H-Mn L-Bb L-Mn 
HMG_box Domain Q00059_50-118 8.7e-21 1 CL0114 D 50 118 EF  H-Bb H-Mj H-Mn L-Bb 
HMG_box_2 Domain Q00059_152-219 7.1e-14 1 CL0114 D 152 219 EF  H-Bb H-Mj H-Mn L-Bb L-Mn 
HMG_box Domain Q00059_50-118 8.6e-21 1 CL0114 G 50 118 HI  H-Bb H-Mj H-Mn L-Bb 
HMG_box_2 Domain Q00059_152-219 7.1e-14 1 CL0114 G 152 219 HI  H-Bb H-Mj H-Mn L-Bb L-Mn 
HMG_box Domain Q00059_50-118 8.6e-21 1 CL0114 J 50 118 KL  H-Bb H-Mj H-Mn L-Bb 
HMG_box_2 Domain Q00059_152-219 7.1e-14 1 CL0114 J 152 219 KL  H-Bb H-Mj H-Mn L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/D/G/J=42-246 C cytosol
A/D/G/J=42-246 C mitochondrial matrix
A/D/G/J=42-246 C mitochondrial nucleoid
A/D/G/J=42-246 C mitochondrion
A/D/G/J=42-246 C nuclear chromatin
A/D/G/J=42-246 C nucleus
A/D/G/J=42-246 C protein-containing complex
A/D/G/J=42-246 F chromatin binding
A/D/G/J=42-246 F DNA binding, bending
A/D/G/J=42-246 F heat shock protein binding
A/D/G/J=42-246 F mitochondrial promoter sequence-specific DNA binding
A/D/G/J=42-246 F mitochondrial sequence-specific DNA-binding transcription factor activity
A/D/G/J=42-246 F RNA binding
A/D/G/J=42-246 F sequence-specific DNA binding
A/D/G/J=42-246 F transcription coactivator binding
A/D/G/J=42-246 F transcription factor binding
A/D/G/J=42-246 P chromatin remodeling
A/D/G/J=42-246 P mitochondrial respiratory chain complex assembly
A/D/G/J=42-246 P mitochondrial transcription
A/D/G/J=42-246 P mitochondrion organization
A/D/G/J=42-246 P positive regulation of transcription, DNA-templated
A/D/G/J=42-246 P regulation of transcription by RNA polymerase II
A/D/G/J=42-246 P regulation of transcription, DNA-templated
A/D/G/J=42-246 P transcription initiation from mitochondrial promoter
Sequences
Download file with secondary structure created by Stride  
6hb4.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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6hb4.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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D (protein): 
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6hb4.pdb3.pdb:   [ download sequences in FASTA format ]
H (dna): 
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I (dna): 
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G (protein): 
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6hb4.pdb4.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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J (protein): 
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