General information
PDB ID 6IDO
Title CRYSTAL STRUCTURE OF KLEBSIELLA PNEUMONIAE SIGMA4 OF SIGMAS FUSING WITH THE RNA POLYMERASE BETA-FLAP-TIP-HELIX IN COMPLEX WITH -35 ELEMENT DNA
PDB header TRANSCRIPTION
Date 2018-09-10
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.75
Kind dna
Organism ESCHERICHIA COLI, KLEBSIELLA PNEUMONIAE
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6ido.pdb AB CDEF 0
Biounits:
6ido.pdb1.pdb A CD 1
6ido.pdb2.pdb B EF 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Sigma70_r4 Domain P13445_262-315 1.6e-16 1 CL0123 A 22 75 CD  H-Bb H-Mj L-Bb L-Mj 
Sigma70_r4 Domain P13445_262-315 1.1e-16 1 CL0123 B 22 75 EF  H-Bb H-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=256-330 C cytoplasm
A/B=256-330 F bacterial-type RNA polymerase core enzyme binding
A/B=256-330 F DNA binding
A/B=256-330 F DNA-binding transcription factor activity
A/B=256-330 F sigma factor activity
A/B=256-330 P transcription initiation from bacterial-type RNA polymerase promoter
A/B=890-910 F DNA binding
A/B=890-910 F DNA-directed 5'-3' RNA polymerase activity
A/B=890-910 F ribonucleoside binding
A/B=890-910 P transcription, DNA-templated
Sequences
Download file with secondary structure created by Stride  
6ido.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
6ido.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text