General information
PDB ID 6IFM
Title CRYSTAL STRUCTURE OF DNA BOUND VAPBC FROM SALMONELLA TYPHIMURIUM
PDB header TOXIN/ANTITOXIN/DNA
Date 2018-09-20
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6ifm.pdb AECGBFHD MN 0
Biounits:
6ifm.pdb1.pdb AECGBFHD MN 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
PIN Domain Q8ZM86_4-126 6.7e-15 1 CL0280 A 4 126   
MazE_antitoxin Domain Q7CPV2_7-57 1.3e-05 1 CL0132 B 6 56 MN  H-Bb S-Bb S-Mj L-Mj 
PIN Domain Q8ZM86_4-126 6.7e-15 1 CL0280 C 4 126   
MazE_antitoxin Domain Q7CPV2_7-57 1.3e-05 1 CL0132 D 6 56 MN  H-Bb S-Bb S-Mj L-Bb L-Mj 
PIN Domain Q8ZM86_4-126 6.7e-15 1 CL0280 E 4 126   
MazE_antitoxin Domain Q7CPV2_7-57 1.3e-05 1 CL0132 F 6 56 MN  S-Mj L-Bb L-Mj 
PIN Domain Q8ZM86_4-126 6.7e-15 1 CL0280 G 4 126   
MazE_antitoxin Domain Q7CPV2_7-57 1.3e-05 1 CL0132 H 6 56 MN  H-Bb S-Bb S-Mj L-Bb L-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/C/E/G=1-132 F endonuclease activity
A/C/E/G=1-132 F magnesium ion binding
A/C/E/G=1-132 F ribonuclease activity
B/D/F/H=1-68 F DNA binding
Sequences
Download file with secondary structure created by Stride  
6ifm.pdb1.pdb:   [ download sequences in FASTA format ]
M (dna): 
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N (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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