General information
PDB ID 6JNN
Title REF6 ZNF2-4-NAC004-MC1 COMPLEX
PDB header DNA BINDING PROTEIN/DNA
Date 2019-03-17
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.6
Kind dna
Organism ARABIDOPSIS THALIANA, SYNTHETIC CONSTRUCT
Download
complex
View in
Jmol
Quick Links
PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6jnn.pdb ABNG DCFEIHLK 0
Biounits:
6jnn.pdb1.pdb A DC 1
6jnn.pdb2.pdb B FE 1
6jnn.pdb3.pdb N IH 1
6jnn.pdb4.pdb G LK 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-H2C2_2 Domain Q9STM3_1308-1334 0.00062 0 CL0361 A 1312 1338 CD  H-Bb H-Mj S-Bb 
zf-H2C2_2 Domain Q9STM3_1308-1334 0.00062 0 CL0361 B 1312 1338 EF  H-Bb H-Mj S-Bb 
zf-H2C2_2 Domain Q9STM3_1308-1334 0.00061 0 CL0361 G 1312 1338 L  H-Bb H-Mj 
zf-H2C2_2 Domain Q9STM3_1308-1334 0.00062 0 CL0361 N 1312 1338 I  H-Bb H-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/G/N=1260-1360 C histone methyltransferase complex
A/B/G/N=1260-1360 C nucleus
A/B/G/N=1260-1360 F dioxygenase activity
A/B/G/N=1260-1360 F histone demethylase activity
A/B/G/N=1260-1360 F histone demethylase activity (H3-trimethyl-K4 specific)
A/B/G/N=1260-1360 F metal ion binding
A/B/G/N=1260-1360 P chromatin remodeling
A/B/G/N=1260-1360 P histone H3-K9 demethylation
A/B/G/N=1260-1360 P leaf development
A/B/G/N=1260-1360 P negative regulation of histone acetylation
A/B/G/N=1260-1360 P response to brassinosteroid
A/B/G/N=1260-1360 P unidimensional cell growth
A/B/G/N=1260-1360 P vegetative to reproductive phase transition of meristem
Sequences
Download file with secondary structure created by Stride  
6jnn.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
Click "SHOW" for view sequence
D (dna): 
Click "SHOW" for view sequence
A (protein): 
Click "SHOW" for view sequence
6jnn.pdb2.pdb:   [ download sequences in FASTA format ]
E (dna): 
Click "SHOW" for view sequence
F (dna): 
Click "SHOW" for view sequence
B (protein): 
Click "SHOW" for view sequence
6jnn.pdb3.pdb:   [ download sequences in FASTA format ]
H (dna): 
Click "SHOW" for view sequence
I (dna): 
Click "SHOW" for view sequence
N (protein): 
Click "SHOW" for view sequence
6jnn.pdb4.pdb:   [ download sequences in FASTA format ]
K (dna): 
Click "SHOW" for view sequence
L (dna): 
Click "SHOW" for view sequence
G (protein): 
Click "SHOW" for view sequence
© NPIDB team 2003 - 2021

text