General information
PDB ID 6JOO
Title CRYSTAL STRUCTURE OF CORYNEBACTERIUM DIPHTHERIAE CAS9 IN COMPLEX WITH SGRNA AND TARGET DNA
PDB header HYDROLASE/DNA/RNA
Date 2019-03-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.9
Kind hybrid
Organism CORYNEBACTERIUM DIPHTHERIAE
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6joo.pdb A DC B 0
Biounits:
6joo.pdb1.pdb A DC B 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Cas9_b_hairpin Domain Q6NKI3_814-903 1.1e-39 1 No_clan A 814 903 BCD  L-Bb 
Cas9_C Domain Q6NKI3_977-1084 2.8e-36 1 No_clan A 977 1084 BCD  H-Bb S-Bb S-Mj L-Bb L-Mj 
Cas9_a Domain Q6NKI3_280-401 1.9e-31 1 CL0693 A 298 458 BC   
Cas9_Topo Domain Q6NKI3_906-976 7.1e-27 1 No_clan A 906 976 BD  S-Bb 
RuvC_III Domain Q6NKI3_667-810 3.1e-11 1 No_clan A 700 802   
Cas9_a Domain Q6NKI3_234-287 4.5e-11 1 CL0693 A 239 339 BC   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-497, A=664-1084 F DNA binding
A=1-497, A=664-1084 F endonuclease activity
A=1-497, A=664-1084 F metal ion binding
A=1-497, A=664-1084 F RNA binding
A=1-497, A=664-1084 P defense response to virus
Sequences
Download file with secondary structure created by Stride  
6joo.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (rna): 
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