General information
PDB ID 6K4Y
Title CRYOEM STRUCTURE OF SIGMA APPROPRIATION COMPLEX
PDB header TRANSCRIPTION
Date 2019-05-27
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.79
Kind dna
Organism ESCHERICHIA COLI K-12, ENTEROBACTERIA PHAGE T4
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6k4y.pdb ABCDEFIM NT 0
Biounits:
6k4y.pdb1.pdb ABCDEFIM NT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RNA_pol_A_bac Domain P0A7Z4_58-186 7.6e-24 1 No_clan A 58 186   
RNA_pol_L Domain P0A7Z4_29-228 1e-22 1 CL0509 A 29 228   
RNA_pol_A_bac Domain P0A7Z4_58-186 7.3e-24 1 No_clan B 58 186   
RNA_pol_L Domain P0A7Z4_29-228 1e-22 1 CL0509 B 29 228   
RNA_pol_Rpb2_6 Domain P0A8V2_717-1264 3.2e-160 1 CL0410 C 717 1264   
RNA_pol_Rpb2_3 Domain P0A8V2_513-581 1.7e-29 1 No_clan C 513 581 N  L-Mj L-Mn 
RNA_pol_Rpb2_45 Domain P0A8V2_591-656 2.1e-27 1 No_clan C 591 656   
RNA_pol_Rpb2_7 Domain P0A8V2_1266-1342 4.5e-27 1 No_clan C 1266 1341   
RNA_pol_Rpb2_2 Domain P0A8V2_329-454 6.1e-15 1 No_clan C 329 454   
RNA_pol_Rpb2_2 Domain P0A8V2_151-276 2.7e-07 1 No_clan C 151 276 N   
RNA_pol_Rpb1_1 Domain P0A8T7_15-342 1.8e-89 1 No_clan D 16 342 T  H-Bb H-Mj L-Bb 
RNA_pol_Rpb1_5 Domain P0A8T7_766-1317 1.2e-68 1 No_clan D 766 1317   
RNA_pol_Rpb1_2 Domain P0A8T7_386-486 4.2e-27 1 No_clan D 386 486   
RNA_pol_Rpb1_3 Domain P0A8T7_489-644 5e-27 1 No_clan D 489 644   
RNA_pol_Rpb1_4 Domain P0A8T7_673-764 1.4e-18 1 No_clan D 673 764   
RNA_pol_Rpb1_2 Domain P0A8T7_344-401 1.3e-07 1 No_clan D 344 401   
Sigma70_ner Domain P00579_137-348 2.4e-45 1 CL0123 F 167 348   
Sigma70_r2 Domain P00579_379-449 1.1e-21 1 CL0123 F 379 449 NT  H-Bb H-Mj H-Mn 
Sigma70_r4 Domain P00579_547-600 3.6e-19 1 CL0123 F 547 600   
Sigma70_ner Domain P00579_49-82 3e-09 1 CL0123 F 137 215   
AsiA Domain P32267_3-81 7e-42 1 No_clan I 3 81 NT  H-Bb L-Bb 
MotCF Domain P22915_106-208 2.6e-69 1 No_clan M 106 208 NT  S-Bb S-Mj L-Bb L-Mj 
MotA_activ Domain P22915_3-96 6.5e-61 1 CL0123 M 3 96   
RNA_pol_Rpb2_1 Family P0A8V2_26-500 2.6e-58 1 No_clan C 26 500 N   
RNA_pol_Rpb6 Family P0A800_8-60 4.1e-17 1 No_clan E 8 60   
Sigma70_r3 Family P00579_458-535 1.2e-29 1 CL0123 F 458 543 N  H-Bb 
Sigma70_r1_2 Family P00579_96-128 1.8e-12 1 No_clan F 96 129 N   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-329 C cytoplasm
A/B=1-329 C cytosol
A/B=1-329 C membrane
A/B=1-329 F DNA binding
A/B=1-329 F DNA-directed 5'-3' RNA polymerase activity
A/B=1-329 F protein dimerization activity
A/B=1-329 P transcription, DNA-templated
C=1-1342 C cytoplasm
C=1-1342 C cytosol
C=1-1342 C membrane
C=1-1342 F DNA binding
C=1-1342 F DNA-directed 5'-3' RNA polymerase activity
C=1-1342 F ribonucleoside binding
C=1-1342 P response to antibiotic
C=1-1342 P transcription, DNA-templated
D=1-1407 C cytoplasm
D=1-1407 C cytosol
D=1-1407 C membrane
D=1-1407 F DNA binding
D=1-1407 F DNA-directed 5'-3' RNA polymerase activity
D=1-1407 F magnesium ion binding
D=1-1407 F zinc ion binding
D=1-1407 P response to antibiotic
D=1-1407 P transcription, DNA-templated
E=1-91 C cytosol
E=1-91 C RNA polymerase complex
E=1-91 F DNA binding
E=1-91 F DNA-directed 5'-3' RNA polymerase activity
E=1-91 P protein-containing complex assembly
E=1-91 P transcription, DNA-templated
F=1-613 C cytosol
F=1-613 F DNA binding
F=1-613 F DNA-binding transcription factor activity
F=1-613 F sigma factor activity
F=1-613 P response to heat
F=1-613 P transcription initiation from bacterial-type RNA polymerase promoter
I=1-90 P regulation of transcription, DNA-templated
M=1-211 F DNA binding
Sequences
Download file with secondary structure created by Stride  
6k4y.pdb1.pdb:   [ download sequences in FASTA format ]
N (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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I (protein): 
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M (protein): 
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