General information
PDB ID 6KDJ
Title HIV-1 REVERSE TRANSCRIPTASE WITH Q151M/Y115F/F116Y:DNA:LAMIVUDINE 5'- TRIPHOSPHATE TERNARY COMPLEX
PDB header TRANSFERASE/DNA
Date 2019-07-02
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.51
Kind dna
Organism HUMAN IMMUNODEFICIENCY VIRUS 1, HUMAN IMMUNODEFICIENCY VIRUS TYPE 1, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6kdj.pdb ABCD EF 0
Biounits:
6kdj.pdb1.pdb AB E 1
6kdj.pdb2.pdb CD F 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RVT_connect Domain P12497_905-1006 1.2e-58 1 No_clan A 318 419 E  S-Bb L-Bb 
RVT_1 Domain P12497_650-821 1.7e-33 1 CL0027 A 63 234 E   
RNase_H Domain P12497_1023-1140 3.1e-27 1 CL0219 A 436 553 E  L-Bb 
RVT_thumb Domain P12497_828-891 1e-20 1 No_clan A 241 304 E  L-Bb 
RVT_connect Domain P12497_905-1006 6.8e-59 1 No_clan B 318 419 E  L-Bb 
RVT_1 Domain P12497_650-821 2.4e-33 1 CL0027 B 63 260   
RVT_thumb Domain P12497_828-891 6.7e-21 1 No_clan B 241 304 E   
RVT_connect Domain P12497_905-1006 1.2e-58 1 No_clan C 318 419 F  S-Bb L-Bb 
RVT_1 Domain P12497_650-821 1.7e-33 1 CL0027 C 63 234 F   
RNase_H Domain P12497_1023-1140 3.1e-27 1 CL0219 C 436 553 F  L-Bb 
RVT_thumb Domain P12497_828-891 1e-20 1 No_clan C 241 304 F  H-Bb L-Bb 
RVT_connect Domain P12497_905-1006 6.8e-59 1 No_clan D 318 419 F  H-Bb L-Bb 
RVT_1 Domain P12497_650-821 2.4e-33 1 CL0027 D 63 260   
RVT_thumb Domain P12497_828-891 6.7e-21 1 No_clan D 241 304   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
B/D=588-1015 C host cell nucleus
B/D=588-1015 C host cell plasma membrane
B/D=588-1015 C host multivesicular body
B/D=588-1015 C viral nucleocapsid
B/D=588-1015 C virion membrane
B/D=588-1015 F aspartic-type endopeptidase activity
B/D=588-1015 F DNA binding
B/D=588-1015 F DNA-directed DNA polymerase activity
B/D=588-1015 F exoribonuclease H activity
B/D=588-1015 F identical protein binding
B/D=588-1015 F lipid binding
B/D=588-1015 F phosphatidylinositol-4,5-bisphosphate binding
B/D=588-1015 F RNA binding
B/D=588-1015 F RNA-directed DNA polymerase activity
B/D=588-1015 F RNA-DNA hybrid ribonuclease activity
B/D=588-1015 F structural molecule activity
B/D=588-1015 F zinc ion binding
B/D=588-1015 P DNA integration
B/D=588-1015 P DNA recombination
B/D=588-1015 P establishment of integrated proviral latency
B/D=588-1015 P induction by virus of host cysteine-type endopeptidase activity involved in apoptotic process
B/D=588-1015 P suppression by virus of host gene expression
B/D=588-1015 P viral entry into host cell
B/D=588-1015 P viral genome integration into host DNA
B/D=588-1015 P viral penetration into host nucleus
Sequences
Download file with secondary structure created by Stride  
6kdj.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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A (protein): 
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B (protein): 
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6kdj.pdb2.pdb:   [ download sequences in FASTA format ]
F (dna): 
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C (protein): 
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D (protein): 
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