General information
PDB ID 6KHY
Title THE CRYSTAL STRUCTURE OF ASFVAP:AG
PDB header DNA BINDING PROTEIN
Date 2019-07-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.01
Kind dna
Organism AFRICAN SWINE FEVER VIRUS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6khy.pdb ABCD EFGHIJ 0
Biounits:
6khy.pdb1.pdb AC EF 1
6khy.pdb2.pdb B GH 2
6khy.pdb3.pdb D IJ 2
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
AP_endonuc_2 Domain P0C9C6_29-284 6.8e-24 1 CL0036 A 29 283 EF  L-Bb L-Mj L-Mn 
AP_endonuc_2 Domain P0C9C6_29-284 6.8e-24 1 CL0036 B 29 283 GH   
AP_endonuc_2 Domain P0C9C6_29-284 6.8e-24 1 CL0036 C 29 283 EF  L-Bb L-Mj L-Mn 
AP_endonuc_2 Domain P0C9C6_29-284 6.8e-24 1 CL0036 D 29 283 IJ   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-296 C host cell cytoplasm
A/B/C/D=1-296 C host cell nucleus
A/B/C/D=1-296 F DNA binding
A/B/C/D=1-296 F endonuclease activity
A/B/C/D=1-296 F exonuclease activity
A/B/C/D=1-296 F zinc ion binding
A/B/C/D=1-296 P DNA repair
Sequences
Download file with secondary structure created by Stride  
6khy.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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C (protein): 
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6khy.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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B (protein): 
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6khy.pdb3.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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D (protein): 
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