General information
PDB ID 6KSF
Title CRYSTAL STRUCTURE OF ALKBH1 BOUND TO 21-MER DNA BULGE
PDB header GENE REGULATION
Date 2019-08-23
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.4
Kind dna
Organism MUS MUSCULUS, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6ksf.pdb A BC 0
Biounits:
6ksf.pdb1.pdb A BC 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
2OG-FeII_Oxy_2 Domain P0CB42_98-344 5e-36 1 CL0029 A 98 344 BC  L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=20-355 C endoplasmic reticulum
A=20-355 C mitochondrion
A=20-355 C nuclear euchromatin
A=20-355 C nucleoplasm
A=20-355 F 1-ethyladenine demethylase activity
A=20-355 F 2-oxoglutarate-dependent dioxygenase activity
A=20-355 F chemoattractant activity
A=20-355 F class I DNA-(apurinic or apyrimidinic site) endonuclease activity
A=20-355 F ferrous iron binding
A=20-355 F methylcytosine dioxygenase activity
A=20-355 F oxidative DNA demethylase activity
A=20-355 F oxidative RNA demethylase activity
A=20-355 F tRNA binding
A=20-355 F tRNA demethylase activity
A=20-355 P cell differentiation
A=20-355 P developmental growth
A=20-355 P DNA dealkylation involved in DNA repair
A=20-355 P DNA demethylation
A=20-355 P DNA repair
A=20-355 P in utero embryonic development
A=20-355 P negative regulation of neuron apoptotic process
A=20-355 P neuron migration
A=20-355 P neuron projection development
A=20-355 P oxidative demethylation
A=20-355 P oxidative RNA demethylation
A=20-355 P placenta development
A=20-355 P regulation of gene expression
A=20-355 P regulation of mitochondrial translation
A=20-355 P regulation of translational elongation
A=20-355 P regulation of translational initiation
A=20-355 P RNA repair
A=20-355 P tRNA demethylation
A=20-355 P tRNA wobble cytosine modification
Sequences
Download file with secondary structure created by Stride  
6ksf.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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A (protein): 
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