General information
PDB ID 6KW5
Title THE CLASSC RSC-NUCLEOSOME COMPLEX
PDB header DNA BINDING PROTEIN/DNA
Date 2019-09-06
Experimental method ELECTRON MICROSCOPY
Resolution (A) 10.13
Kind dna
Organism XENOPUS LAEVIS, HOMO SAPIENS
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6kw5.pdb FHDMIGAJECKXLWfhRSTVOUYgPQ BN 0
Biounits:
6kw5.pdb1.pdb FHDMIGAJECKXLWfhRSTVOUYgPQ BN 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Bromodomain Domain Q07979_29-122 7.1e-07 1 No_clan A 26 122   
SWIRM Domain P43609_83-168 3.2e-29 1 CL0123 D 83 168   
Myb_DNA-binding Domain P43609_312-358 1.3e-09 1 CL0123 D 312 358   
SWIRM Domain P43609_83-168 5e-29 1 CL0123 H 83 168   
ZZ Domain P43609_254-298 1.3e-17 1 CL0006 H 254 298   
Myb_DNA-binding Domain P43609_312-358 1.9e-09 1 CL0123 H 312 358   
SWIB Domain 2.1e-07 1 No_clan I 230 343
Histone Domain P06897_13-91 5.9e-16 1 CL0012 O 12 90 BN  H-Bb S-Bb L-Bb 
HSA Domain P32597_314-382 2e-12 1 CL0023 P 314 382   
SNF2-rel_dom Domain P32597_473-769 2e-76 1 CL0023 Q 473 769 BN  H-Bb H-Mn L-Bb 
Helicase_C Domain P32597_791-905 9.3e-21 1 CL0023 Q 791 905 B  L-Bb L-Mj 
Histone Domain P84233_37-132 9.2e-46 1 CL0012 R 39 131 BN  H-Bb H-Mj S-Bb S-Mn L-Bb 
CENP-T_C Domain P62799_18-99 4.7e-08 1 CL0012 S 25 98 BN  H-Bb L-Bb 
Histone Domain P06897_19-91 9.8e-16 1 CL0012 T 15 90 B  H-Bb 
Histone Domain A0A1L8G0X3_33-102 1.8e-21 1 CL0012 U 32 101 NB  H-Bb S-Bb L-Bb 
Histone Domain P84233_37-132 3.2e-45 1 CL0012 V 40 131 BN  H-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 5.3e-08 1 CL0012 W 19 98 BN  H-Bb S-Bb 
Histone Domain A0A1L8G0X3_33-102 1.8e-21 1 CL0012 Y 32 101 BN  H-Bb H-Mj S-Bb L-Bb 
SWIRM-assoc_1 Family P43609_415-486 2.9e-07 1 No_clan D 396 486   
Actin Family Q12406_2-466 6.8e-55 1 CL0108 f 2 464   
SNF5 Family Q06168_198-278 7e-19 1 No_clan G 198 277   
SNF5 Family Q06168_271-383 4.4e-18 1 No_clan G 270 383   
Actin Family Q05123_18-375 3.8e-14 1 CL0108 g 18 288   
SWIRM-assoc_1 Family P43609_406-486 3.9e-08 1 No_clan H 406 486   
Rtt102p Family P53330_5-90 3.8e-06 1 No_clan h 33 90   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan O 91 118   
Histone_H2A_C Family P06897_92-120 3e-17 1 No_clan T 91 118   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6kw5.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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N (dna): 
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A (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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f (protein): 
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g (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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