General information
PDB ID 6MRJ
Title CRYSTAL STRUCTURE OF H.PYLORI NIKR IN COMPLEX WITH DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2018-10-13
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.8
Kind dna
Organism SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6mrj.pdb ABCD LM 0
Biounits:
6mrj.pdb1.pdb ABCD LM 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
NikR_C Domain O25896_65-141 1.4e-29 1 CL0070 A 65 141   
RHH_1 Domain O25896_12-51 1.7e-10 1 CL0057 A 12 51 LM  H-Bb S-Bb S-Mj L-Bb 
NikR_C Domain O25896_65-141 1.6e-29 1 CL0070 B 65 141   
RHH_1 Domain O25896_12-51 1.9e-10 1 CL0057 B 12 51 LM  H-Bb S-Bb S-Mj 
NikR_C Domain O25896_65-141 1.6e-29 1 CL0070 C 65 141   
RHH_1 Domain O25896_12-51 1.9e-10 1 CL0057 C 12 51 LM  H-Bb S-Bb S-Mj 
NikR_C Domain O25896_65-141 1.5e-29 1 CL0070 D 65 141 LM  L-Bb 
RHH_1 Domain O25896_12-51 1.8e-10 1 CL0057 D 12 51 LM  H-Bb S-Bb S-Mj 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-148 C protein-DNA complex
A/B/C/D=1-148 F DNA binding
A/B/C/D=1-148 F DNA-binding transcription repressor activity
A/B/C/D=1-148 F identical protein binding
A/B/C/D=1-148 F nickel cation binding
A/B/C/D=1-148 F sequence-specific DNA binding
A/B/C/D=1-148 F transcription regulatory region sequence-specific DNA binding
A/B/C/D=1-148 P negative regulation of transcription, DNA-templated
A/B/C/D=1-148 P regulation of transcription, DNA-templated
A/B/C/D=1-148 P response to nickel cation
Sequences
Download file with secondary structure created by Stride  
6mrj.pdb1.pdb:   [ download sequences in FASTA format ]
L (dna): 
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M (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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