General information
PDB ID 6NJQ
Title STRUCTURE OF TBP-HOOGSTEEN CONTAINING DNA COMPLEX
PDB header DNA BINDING PROTEIN/DNA
Date 2019-01-04
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.75
Kind dna
Organism ARABIDOPSIS THALIANA, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6njq.pdb BA EFCD 0
Biounits:
6njq.pdb1.pdb B EF 1
6njq.pdb2.pdb A CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
TBP Domain P28147_112-195 3.7e-33 1 CL0407 A 112 195 CD  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P28147_22-104 9.8e-32 1 CL0407 A 22 104 CD  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P28147_112-195 3.7e-33 1 CL0407 B 112 195 EF  S-Bb S-Mn L-Bb L-Mj L-Mn 
TBP Domain P28147_22-104 9.8e-32 1 CL0407 B 22 104 EF  S-Bb S-Mj S-Mn L-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B=1-200 C nucleus
A/B=1-200 C transcription factor TFIID complex
A/B=1-200 C transcription regulator complex
A/B=1-200 F DNA-binding transcription factor activity
A/B=1-200 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
A/B=1-200 F RNA polymerase II core promoter sequence-specific DNA binding
A/B=1-200 F transcription factor binding
A/B=1-200 P DNA-templated transcription, initiation
A/B=1-200 P transcription by RNA polymerase II
Sequences
Download file with secondary structure created by Stride  
6njq.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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B (protein): 
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6njq.pdb2.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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