General information
PDB ID 6OET
Title CRYO-EM STRUCTURE OF MOUSE RAG1/2 STC COMPLEX
PDB header RECOMBINATION/DNA
Date 2019-03-27
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.4
Kind dna
Organism MUS MUSCULUS, ESCHERICHIA COLI K-12
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6oet.pdb ABCD FIJGLM 0
Biounits:
6oet.pdb1.pdb ABCD FIJGLM 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RAG1 Family P15919_391-1008 0 1 No_clan A 391 1008 FGILM  H-Bb H-Mj H-Mn L-Bb L-Mj L-Mn 
RAG1 Family P15919_385-1007 0 1 No_clan C 385 1007 FGJLM  H-Bb H-Mj L-Bb L-Mj L-Mn 
RAG2 Repeat P21784_51-351 1.6e-166 1 CL0186 B 51 350   
RAG2 Repeat P21784_51-351 1e-166 1 CL0186 D 51 351   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/C=1-1040 C DNA recombinase complex
A/C=1-1040 C endodeoxyribonuclease complex
A/C=1-1040 C nucleoplasm
A/C=1-1040 C nucleus
A/C=1-1040 F endonuclease activity
A/C=1-1040 F histone binding
A/C=1-1040 F identical protein binding
A/C=1-1040 F metal ion binding
A/C=1-1040 F protein homodimerization activity
A/C=1-1040 F sequence-specific DNA binding
A/C=1-1040 F ubiquitin protein ligase activity
A/C=1-1040 F ubiquitin-protein transferase activity
A/C=1-1040 F zinc ion binding
A/C=1-1040 P adaptive immune response
A/C=1-1040 P B cell differentiation
A/C=1-1040 P DNA recombination
A/C=1-1040 P histone monoubiquitination
A/C=1-1040 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
A/C=1-1040 P negative regulation of T cell apoptotic process
A/C=1-1040 P negative regulation of thymocyte apoptotic process
A/C=1-1040 P positive regulation of T cell differentiation
A/C=1-1040 P pre-B cell allelic exclusion
A/C=1-1040 P protein autoubiquitination
A/C=1-1040 P regulation of behavioral fear response
A/C=1-1040 P regulation of T cell differentiation
A/C=1-1040 P T cell differentiation in thymus
A/C=1-1040 P T cell homeostasis
A/C=1-1040 P thymus development
A/C=1-1040 P V(D)J recombination
A/C=1-1040 P visual learning
B/D=1-527 C DNA recombinase complex
B/D=1-527 C nucleoplasm
B/D=1-527 C nucleus
B/D=1-527 F chromatin binding
B/D=1-527 F methylated histone binding
B/D=1-527 F phosphatidylinositol binding
B/D=1-527 F phosphatidylinositol-3,4,5-trisphosphate binding
B/D=1-527 F phosphatidylinositol-3,4-bisphosphate binding
B/D=1-527 F phosphatidylinositol-3,5-bisphosphate binding
B/D=1-527 F phosphatidylinositol-4,5-bisphosphate binding
B/D=1-527 F sequence-specific DNA binding
B/D=1-527 F ubiquitin protein ligase activity
B/D=1-527 F zinc ion binding
B/D=1-527 P B cell differentiation
B/D=1-527 P B cell homeostatic proliferation
B/D=1-527 P B cell lineage commitment
B/D=1-527 P chromatin organization
B/D=1-527 P defense response to bacterium
B/D=1-527 P DNA recombination
B/D=1-527 P positive regulation of organ growth
B/D=1-527 P pre-B cell allelic exclusion
B/D=1-527 P T cell differentiation
B/D=1-527 P T cell differentiation in thymus
B/D=1-527 P T cell lineage commitment
B/D=1-527 P V(D)J recombination
Sequences
Download file with secondary structure created by Stride  
6oet.pdb1.pdb:   [ download sequences in FASTA format ]
F (dna): 
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G (dna): 
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I (dna): 
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J (dna): 
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L (dna): 
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M (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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