General information
PDB ID 6OM3
Title CRYSTAL STRUCTURE OF THE ORC1 BAH DOMAIN IN COMPLEX WITH A NUCLEOSOME CORE PARTICLE
PDB header STRUCTURAL PROTEIN/DNA
Date 2019-04-18
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.3
Kind dna
Organism XENOPUS LAEVIS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6om3.pdb ABCDEFGHKLMNOPQRSTWX IJUV 0
Biounits:
6om3.pdb1.pdb ABCDEFGHKL IJ 1
6om3.pdb2.pdb MNOPQRSTWX UV 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Histone Domain P84233_37-132 7.9e-46 1 CL0012 A 38 131 IJ  H-Bb S-Bb L-Bb L-Mj L-Mn 
CENP-T_C Domain P62799_18-99 5e-08 1 CL0012 B 24 98 IJ  S-Bb L-Bb L-Mj 
Histone Domain P06897_19-91 9.8e-16 1 CL0012 C 15 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 D 32 101 IJ  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P84233_37-132 8.2e-45 1 CL0012 E 40 131 IJ  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_18-99 4.8e-08 1 CL0012 F 24 98 IJ  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 G 12 90 IJ  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 H 32 101 IJ  S-Bb L-Bb L-Mj 
BAH Domain P54784_48-188 1.7e-17 1 No_clan K 48 188   
BAH Domain P54784_48-188 1.6e-21 1 No_clan L 48 188   
Histone Domain P84233_37-132 3.8e-46 1 CL0012 M 37 131 UV  H-Bb H-Mj S-Bb L-Bb L-Mn 
CENP-T_C Domain P62799_18-99 5e-08 1 CL0012 N 24 98 UV  H-Bb H-Mj S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 O 12 90 UV  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 P 32 101 UV  H-Bb S-Bb L-Bb L-Mn 
Histone Domain P84233_37-132 8.2e-45 1 CL0012 Q 40 131 UV  H-Bb S-Bb L-Bb 
CENP-T_C Domain P62799_26-99 4.4e-08 1 CL0012 R 25 98 UV  H-Bb S-Bb L-Bb 
Histone Domain P06897_13-91 5.9e-16 1 CL0012 S 12 90 UV  H-Bb S-Bb L-Bb 
Histone Domain P02281_33-102 1.1e-21 1 CL0012 T 32 101 UV  H-Bb L-Bb L-Mn 
BAH Domain P54784_48-188 2.1e-18 1 No_clan W 48 188   
Histone_H2A_C Family P06897_92-120 3e-17 1 No_clan C 91 118   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan G 91 118   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan O 91 118   
Histone_H2A_C Family P06897_92-120 3.1e-17 1 No_clan S 91 118   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/E/M/Q=2-136 C nucleoplasm
A/E/M/Q=2-136 C nucleosome
A/E/M/Q=2-136 F DNA binding
A/E/M/Q=2-136 F protein heterodimerization activity
B/F/N/R=1-103 C host cell nucleus
B/F/N/R=1-103 C nucleosome
B/F/N/R=1-103 C nucleus
B/F/N/R=1-103 F DNA binding
B/F/N/R=1-103 F protein heterodimerization activity
B/F/N/R=1-103 P DNA-templated transcription, initiation
C/G/O/S=1-130 C nucleosome
C/G/O/S=1-130 C nucleus
C/G/O/S=1-130 F DNA binding
C/G/O/S=1-130 F protein heterodimerization activity
D/H/P/T=1-126 C nucleosome
D/H/P/T=1-126 C nucleus
D/H/P/T=1-126 F DNA binding
D/H/P/T=1-126 F protein heterodimerization activity
K/L/W/X=2-214 C DNA replication preinitiation complex
K/L/W/X=2-214 C nuclear chromosome, telomeric region
K/L/W/X=2-214 C nuclear origin of replication recognition complex
K/L/W/X=2-214 C nuclear pre-replicative complex
K/L/W/X=2-214 C nucleus
K/L/W/X=2-214 F ATP binding
K/L/W/X=2-214 F ATPase activity
K/L/W/X=2-214 F chromatin binding
K/L/W/X=2-214 F DNA replication origin binding
K/L/W/X=2-214 F metal ion binding
K/L/W/X=2-214 F nucleosome binding
K/L/W/X=2-214 P DNA replication initiation
K/L/W/X=2-214 P maintenance of rDNA
K/L/W/X=2-214 P mitotic cell cycle
K/L/W/X=2-214 P mitotic DNA replication checkpoint
K/L/W/X=2-214 P pre-replicative complex assembly involved in nuclear cell cycle DNA replication
K/L/W/X=2-214 P silent mating-type cassette heterochromatin assembly
Sequences
Download file with secondary structure created by Stride  
6om3.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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E (protein): 
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F (protein): 
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G (protein): 
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H (protein): 
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K (protein): 
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L (protein): 
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6om3.pdb2.pdb:   [ download sequences in FASTA format ]
U (dna): 
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V (dna): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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W (protein): 
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X (protein): 
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