General information
PDB ID 6P0B
Title HUMAN DNA LIGASE 1 (E346A/E592A) BOUND TO AN ADENYLATED, DIDEOXY TERMINATED DNA NICK WITH 200 MM MG2+
PDB header LIGASE
Date 2019-05-16
Experimental method X-RAY DIFFRACTION
Resolution (A) 2.2
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6p0b.pdb A BCD 0
Biounits:
6p0b.pdb1.pdb A BCD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
DNA_ligase_A_M Domain P18858_542-746 4.6e-68 1 CL0078 A 542 746 BCD  H-Bb S-Bb S-Mj L-Bb L-Mn 
DNA_ligase_A_N Family P18858_288-464 1.9e-37 1 No_clan A 288 464 BCD  H-Bb H-Mn L-Bb 
DNA_ligase_A_C Family P18858_771-882 6.7e-24 1 CL0021 A 771 882 CDB  H-Bb H-Mn S-Bb S-Mn L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=262-904 C cytoplasm
A=262-904 C intracellular membrane-bounded organelle
A=262-904 C mitochondrion
A=262-904 C nucleoplasm
A=262-904 C nucleus
A=262-904 F ATP binding
A=262-904 F DNA binding
A=262-904 F DNA ligase (ATP) activity
A=262-904 F DNA ligase activity
A=262-904 F metal ion binding
A=262-904 P anatomical structure morphogenesis
A=262-904 P base-excision repair
A=262-904 P cell division
A=262-904 P DNA biosynthetic process
A=262-904 P DNA ligation
A=262-904 P DNA ligation involved in DNA repair
A=262-904 P DNA recombination
A=262-904 P DNA repair
A=262-904 P lagging strand elongation
A=262-904 P mismatch repair
A=262-904 P nucleotide-excision repair, DNA gap filling
A=262-904 P Okazaki fragment processing involved in mitotic DNA replication
A=262-904 P transcription-coupled nucleotide-excision repair
Sequences
Download file with secondary structure created by Stride  
6p0b.pdb1.pdb:   [ download sequences in FASTA format ]
B (dna): 
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C (dna): 
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D (dna): 
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A (protein): 
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