General information
PDB ID 6P1H
Title CRYO-EM STRUCTURE OF DNA POLYMERASE DELTA HOLOENZYME
PDB header DNA BINDING PROTEIN/DNA
Date 2019-05-19
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.2
Kind dna
Organism SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6p1h.pdb ABC PT 0
Biounits:
6p1h.pdb1.pdb ABC PT 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
zf-C4pol Domain P15436_1030-1080 1.5e-12 1 No_clan A 984 1080   
DNA_pol_D_N Domain P46957_52-190 1.6e-37 1 CL0021 B 52 190   
DNA_pol_B Family P15436_546-973 1.1e-144 1 CL0194 A 546 973 PT  H-Bb H-Mn S-Bb L-Bb L-Mn 
DNA_pol_B_exo1 Family P15436_142-482 1.6e-94 1 CL0219 A 142 482 T  L-Mj 
DNA_pol_E_B Family P46957_214-446 1e-52 1 CL0163 B 214 446   
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=1-1097 C cytosol
A=1-1097 C delta DNA polymerase complex
A=1-1097 C replication fork
A=1-1097 F 3'-5'-exodeoxyribonuclease activity
A=1-1097 F 4 iron, 4 sulfur cluster binding
A=1-1097 F DNA binding
A=1-1097 F DNA-directed DNA polymerase activity
A=1-1097 F metal ion binding
A=1-1097 F nucleotide binding
A=1-1097 P base-excision repair, gap-filling
A=1-1097 P DNA replication
A=1-1097 P DNA replication proofreading
A=1-1097 P DNA replication, removal of RNA primer
A=1-1097 P DNA-dependent DNA replication
A=1-1097 P DNA-dependent DNA replication maintenance of fidelity
A=1-1097 P nucleotide-excision repair, DNA gap filling
A=1-1097 P RNA-dependent DNA biosynthetic process
B=1-487 C cytosol
B=1-487 C delta DNA polymerase complex
B=1-487 C DNA polymerase complex
B=1-487 C nucleus
B=1-487 F DNA binding
B=1-487 F DNA-directed DNA polymerase activity
B=1-487 P base-excision repair
B=1-487 P DNA replication, removal of RNA primer
B=1-487 P DNA strand elongation involved in DNA replication
B=1-487 P lagging strand elongation
B=1-487 P leading strand elongation
B=1-487 P mismatch repair
B=1-487 P nucleic acid phosphodiester bond hydrolysis
B=1-487 P nucleotide-excision repair
B=1-487 P postreplication repair
B=1-487 P RNA-dependent DNA biosynthetic process
C=1-350 C delta DNA polymerase complex
C=1-350 C nucleus
C=1-350 F DNA-directed DNA polymerase activity
C=1-350 P base-excision repair
C=1-350 P DNA amplification
C=1-350 P DNA replication, removal of RNA primer
C=1-350 P double-strand break repair via break-induced replication
C=1-350 P lagging strand elongation
C=1-350 P leading strand elongation
C=1-350 P nucleic acid phosphodiester bond hydrolysis
C=1-350 P nucleotide-excision repair
C=1-350 P postreplication repair
C=1-350 P RNA-dependent DNA biosynthetic process
Sequences
Download file with secondary structure created by Stride  
6p1h.pdb1.pdb:   [ download sequences in FASTA format ]
P (dna): 
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T (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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