General information
PDB ID 6P7E
Title STRUCTURE OF T7 DNA POLYMERASE BOUND TO A PRIMER/TEMPLATE DNA AND A PEPTIDE THAT MIMICS THE C-TERMINAL TAIL OF THE PRIMASE-HELICASE
PDB header TRANSFERASE/DNA BINDING PROTEIN/DNA
Date 2019-06-05
Experimental method X-RAY DIFFRACTION
Resolution (A) 3
Kind dna
Organism ENTEROBACTERIA PHAGE T7, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6p7e.pdb ABCDEFGHUVW IJKLMNOP 0
Biounits:
6p7e.pdb1.pdb AEU IJ 1
6p7e.pdb2.pdb BFV KL 1
6p7e.pdb3.pdb CGW MN 1
6p7e.pdb4.pdb DH OP 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Thioredoxin Domain P0AA25_4-106 3.3e-34 1 CL0172 E 3 105   
Thioredoxin Domain P0AA25_4-106 3.3e-34 1 CL0172 F 3 105   
Thioredoxin Domain P0AA25_4-106 3.3e-34 1 CL0172 G 3 105 M  L-Bb 
Thioredoxin Domain P0AA25_4-106 3.3e-34 1 CL0172 H 3 105   
DNA_pol_A Family P00581_316-702 1.4e-55 1 No_clan A 318 702 IJ  H-Bb H-Mn S-Bb L-Bb L-Mn 
DNA_pol_A Family P00581_316-702 1.4e-55 1 No_clan B 317 702 KL  H-Bb H-Mn S-Bb L-Bb L-Mn 
DNA_pol_A Family P00581_316-702 1.6e-54 1 No_clan C 317 702 MN  L-Bb L-Mn 
DNA_pol_A Family P00581_326-702 1.8e-56 1 No_clan D 247 702 OP  H-Bb S-Bb L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D=1-704 F 3'-5' exonuclease activity
A/B/C/D=1-704 F DNA binding
A/B/C/D=1-704 F DNA-directed DNA polymerase activity
A/B/C/D=1-704 F exodeoxyribonuclease activity
A/B/C/D=1-704 F metal ion binding
A/B/C/D=1-704 F nucleotide binding
A/B/C/D=1-704 P DNA synthesis involved in DNA replication
A/B/C/D=1-704 P DNA-dependent DNA replication
A/B/C/D=1-704 P viral DNA genome replication
Sequences
Download file with secondary structure created by Stride  
6p7e.pdb1.pdb:   [ download sequences in FASTA format ]
I (dna): 
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J (dna): 
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A (protein): 
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E (protein): 
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U (protein): 
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6p7e.pdb2.pdb:   [ download sequences in FASTA format ]
K (dna): 
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L (dna): 
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B (protein): 
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F (protein): 
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V (protein): 
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6p7e.pdb3.pdb:   [ download sequences in FASTA format ]
M (dna): 
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N (dna): 
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C (protein): 
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G (protein): 
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W (protein): 
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6p7e.pdb4.pdb:   [ download sequences in FASTA format ]
O (dna): 
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P (dna): 
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D (protein): 
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H (protein): 
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