General information
PDB ID 6PW2
Title STRUCTURAL BASIS FOR COOPERATIVE BINDING OF EBNA1 TO THE EPSTEIN-BARR VIRUS DYAD SYMMETRY MINIMAL ORIGIN OF REPLICATION
PDB header VIRAL PROTEIN/DNA
Date 2019-07-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 3.01
Kind dna
Organism EPSTEIN-BARR VIRUS (STRAIN B95-8), HUMAN HERPESVIRUS 4 STRAIN B95-8
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6pw2.pdb ABCDIJKL EFGH 0
Biounits:
6pw2.pdb1.pdb ABCD EF 1
6pw2.pdb2.pdb IJKL GH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
EBV-NA1 Domain P03211_461-606 4.8e-101 1 No_clan A 461 606 EF  H-Bb H-Mj S-Bb L-Bb L-Mn 
EBV-NA1 Domain P03211_461-606 4.8e-101 1 No_clan B 461 606 EF  H-Bb H-Mj L-Bb L-Mn 
EBV-NA1 Domain P03211_461-606 4.8e-101 1 No_clan C 461 606 EF  H-Bb H-Mj S-Bb L-Bb L-Mn 
EBV-NA1 Domain P03211_461-606 4.8e-101 1 No_clan D 461 606 EF  H-Bb H-Mj L-Bb L-Mn 
EBV-NA1 Domain P03211_461-606 4.8e-101 1 No_clan I 461 606 GH  H-Bb H-Mj S-Bb L-Bb L-Mn 
EBV-NA1 Domain P03211_461-606 4.8e-101 1 No_clan J 461 606 GH  H-Bb H-Mj S-Bb L-Bb L-Mn 
EBV-NA1 Domain P03211_461-606 4.8e-101 1 No_clan K 461 606 GH  H-Bb H-Mj S-Bb L-Bb L-Mn 
EBV-NA1 Domain P03211_461-606 4.8e-101 1 No_clan L 461 606 GH  H-Bb H-Mj S-Bb L-Bb L-Mn 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/C/D/I/J/K/L=461-607 C host cell nucleus
A/B/C/D/I/J/K/L=461-607 F DNA binding
A/B/C/D/I/J/K/L=461-607 F DNA-binding transcription factor activity
A/B/C/D/I/J/K/L=461-607 P positive regulation of transcription, DNA-templated
A/B/C/D/I/J/K/L=461-607 P regulation of DNA replication
A/B/C/D/I/J/K/L=461-607 P suppression by virus of host adaptive immune response
A/B/C/D/I/J/K/L=461-607 P suppression by virus of host antigen processing and presentation
A/B/C/D/I/J/K/L=461-607 P suppression by virus of host NF-kappaB transcription factor activity
A/B/C/D/I/J/K/L=461-607 P viral latency
Sequences
Download file with secondary structure created by Stride  
6pw2.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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6pw2.pdb2.pdb:   [ download sequences in FASTA format ]
G (dna): 
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H (dna): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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