General information
PDB ID 6V0V
Title CRYO-EM STRUCTURE OF MOUSE WT RAG1/2 NFC COMPLEX (DNA0)
PDB header RECOMBINATION/DNA
Date 2019-11-19
Experimental method ELECTRON MICROSCOPY
Resolution (A) 3.61
Kind dna
Organism MUS MUSCULUS, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6v0v.pdb AB FI 0
Biounits:
6v0v.pdb1.pdb AB FI 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
RAG1 Family P15919_461-1007 0 1 No_clan A 461 1008 FI  H-Bb S-Bb L-Bb L-Mj L-Mn 
RAG2 Repeat P21784_51-351 1.1e-169 1 CL0186 B 51 351 I  S-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A=265-1039 C DNA recombinase complex
A=265-1039 C endodeoxyribonuclease complex
A=265-1039 C nucleoplasm
A=265-1039 C nucleus
A=265-1039 F endonuclease activity
A=265-1039 F histone binding
A=265-1039 F identical protein binding
A=265-1039 F metal ion binding
A=265-1039 F protein homodimerization activity
A=265-1039 F sequence-specific DNA binding
A=265-1039 F ubiquitin protein ligase activity
A=265-1039 F ubiquitin-protein transferase activity
A=265-1039 F zinc ion binding
A=265-1039 P adaptive immune response
A=265-1039 P B cell differentiation
A=265-1039 P DNA recombination
A=265-1039 P histone monoubiquitination
A=265-1039 P negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
A=265-1039 P negative regulation of T cell apoptotic process
A=265-1039 P negative regulation of thymocyte apoptotic process
A=265-1039 P positive regulation of T cell differentiation
A=265-1039 P pre-B cell allelic exclusion
A=265-1039 P protein autoubiquitination
A=265-1039 P regulation of behavioral fear response
A=265-1039 P regulation of T cell differentiation
A=265-1039 P T cell differentiation in thymus
A=265-1039 P T cell homeostasis
A=265-1039 P thymus development
A=265-1039 P V(D)J recombination
A=265-1039 P visual learning
B=1-520 C DNA recombinase complex
B=1-520 C nucleoplasm
B=1-520 C nucleus
B=1-520 F chromatin binding
B=1-520 F methylated histone binding
B=1-520 F phosphatidylinositol binding
B=1-520 F phosphatidylinositol-3,4,5-trisphosphate binding
B=1-520 F phosphatidylinositol-3,4-bisphosphate binding
B=1-520 F phosphatidylinositol-3,5-bisphosphate binding
B=1-520 F phosphatidylinositol-4,5-bisphosphate binding
B=1-520 F sequence-specific DNA binding
B=1-520 F ubiquitin protein ligase activity
B=1-520 F zinc ion binding
B=1-520 P B cell differentiation
B=1-520 P B cell homeostatic proliferation
B=1-520 P B cell lineage commitment
B=1-520 P chromatin organization
B=1-520 P defense response to bacterium
B=1-520 P DNA recombination
B=1-520 P positive regulation of organ growth
B=1-520 P pre-B cell allelic exclusion
B=1-520 P T cell differentiation
B=1-520 P T cell differentiation in thymus
B=1-520 P T cell lineage commitment
B=1-520 P V(D)J recombination
Sequences
Download file with secondary structure created by Stride  
6v0v.pdb1.pdb:   [ download sequences in FASTA format ]
F (dna): 
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I (dna): 
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A (protein): 
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B (protein): 
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