General information
PDB ID 6VCS
Title SRA DOMAIN OF UHRF1 IN COMPLEX WITH DNA
PDB header DNA BINDING PROTEIN/DNA
Date 2019-12-22
Experimental method X-RAY DIFFRACTION
Resolution (A) 1.7
Kind dna
Organism HOMO SAPIENS, SYNTHETIC CONSTRUCT
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
 PDIdb 
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6vcs.pdb ABEG CD 0
Biounits:
6vcs.pdb1.pdb ABEG CD 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
SAD_SRA Domain Q96T88_417-586 7.2e-56 1 CL0178 A 417 586 D  L-Bb L-Mj L-Mn 
SAD_SRA Domain Q96T88_417-586 1.4e-55 1 CL0178 B 417 585 C  L-Bb L-Mj L-Mn 
SAD_SRA Domain Q96T88_417-586 2.5e-53 1 CL0178 E 417 586 CD  S-Bb 
SCOP domains
No SCOP domains
GO terms
Protein chains: GO type: GO description:
A/B/E=414-617 C euchromatin
A/B/E=414-617 C heterochromatin
A/B/E=414-617 C nuclear chromatin
A/B/E=414-617 C nuclear heterochromatin
A/B/E=414-617 C nuclear matrix
A/B/E=414-617 C nucleoplasm
A/B/E=414-617 C nucleus
A/B/E=414-617 C replication fork
A/B/E=414-617 F cis-regulatory region sequence-specific DNA binding
A/B/E=414-617 F hemi-methylated DNA-binding
A/B/E=414-617 F histone binding
A/B/E=414-617 F identical protein binding
A/B/E=414-617 F methyl-CpG binding
A/B/E=414-617 F methylated histone binding
A/B/E=414-617 F nucleosomal histone binding
A/B/E=414-617 F ubiquitin protein ligase activity
A/B/E=414-617 F ubiquitin-protein transferase activity
A/B/E=414-617 F zinc ion binding
A/B/E=414-617 P cell cycle
A/B/E=414-617 P DNA repair
A/B/E=414-617 P histone monoubiquitination
A/B/E=414-617 P histone ubiquitination
A/B/E=414-617 P maintenance of DNA methylation
A/B/E=414-617 P negative regulation of transcription by RNA polymerase II
A/B/E=414-617 P positive regulation of cellular protein metabolic process
A/B/E=414-617 P positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity
A/B/E=414-617 P positive regulation of transcription by RNA polymerase II
A/B/E=414-617 P protein autoubiquitination
A/B/E=414-617 P protein ubiquitination
A/B/E=414-617 P regulation of epithelial cell proliferation
A/B/E=414-617 P ubiquitin-dependent protein catabolic process
Sequences
Download file with secondary structure created by Stride  
6vcs.pdb1.pdb:   [ download sequences in FASTA format ]
C (dna): 
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D (dna): 
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A (protein): 
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B (protein): 
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E (protein): 
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G (protein): 
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