General information
PDB ID 6VDK
Title CRYOEM STRUCTURE OF HIV-1 CONSERVED INTASOME CORE
PDB header TRANSFERASE/DNA
Date 2019-12-27
Experimental method ELECTRON MICROSCOPY
Resolution (A) 4.5
Kind dna
Organism HUMAN IMMUNODEFICIENCY VIRUS 1, ESCHERICHIA COLI
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6vdk.pdb ABCDIJMP EFGH 0
Biounits:
6vdk.pdb1.pdb ABCDIJMP EFGH 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
IN_DBD_C Domain P12497_1372-1415 5.7e-19 1 CL0010 A 225 268   
Integrase_Zn Domain P12497_1155-1192 3.3e-16 1 No_clan A 8 45   
rve Domain P12497_1202-1292 1.6e-13 1 CL0219 A 54 145 GH  L-Bb 
IN_DBD_C Domain P12497_1372-1415 5.5e-19 1 CL0010 B 225 268   
Integrase_Zn Domain P12497_1155-1192 3.2e-16 1 No_clan B 8 45   
rve Domain P12497_1202-1292 1.4e-13 1 CL0219 B 48 145   
IN_DBD_C Domain P12497_1372-1415 5.7e-19 1 CL0010 C 225 268   
Integrase_Zn Domain P12497_1155-1192 3.3e-16 1 No_clan C 8 45   
rve Domain P12497_1202-1292 1.6e-13 1 CL0219 C 54 145 E  L-Bb 
IN_DBD_C Domain P12497_1372-1415 5.4e-19 1 CL0010 D 225 268   
Integrase_Zn Domain P12497_1155-1192 3.2e-16 1 No_clan D 8 45   
rve Domain P12497_1202-1292 1.4e-13 1 CL0219 D 47 145   
IN_DBD_C Domain P12497_1372-1415 1.7e-20 1 CL0010 I 225 268 EG  L-Bb 
IN_DBD_C Domain P12497_1372-1415 1.7e-20 1 CL0010 J 225 268 EG  L-Bb L-Mj 
IN_DBD_C Domain P12497_1372-1415 1.1e-20 1 CL0010 M 225 268 EGH  S-Bb L-Bb 
IN_DBD_C Domain P12497_1372-1415 9.2e-21 1 CL0010 P 225 268 EFG  S-Bb L-Bb 
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6vdk.pdb1.pdb:   [ download sequences in FASTA format ]
E (dna): 
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F (dna): 
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G (dna): 
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H (dna): 
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A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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I (protein): 
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J (protein): 
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M (protein): 
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P (protein): 
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