General information
PDB ID 6ZCE
Title STRUCTURE OF A YEAST ABCE1-BOUND 43S PRE-INITIATION COMPLEX
PDB header RIBOSOME
Date 2020-06-10
Experimental method ELECTRON MICROSCOPY
Resolution (A) 5.3
Kind rna
Organism SACCHAROMYCES CEREVISIAE S288C
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6zce.pdb lrBCDEFGHIJKLMNOPQRSTUVWXYZabcdefghopqimtjks A 0
Biounits:
6zce.pdb1.pdb lrBCDEFGHIJKLMNOPQRSTUVWXYZabcdefghopqimtjks A 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
Ribosomal_S5 Domain P25443_76-140 7.2e-26 1 CL0196 D 76 140 A   
Ribosomal_S5_C Domain P25443_160-233 9.5e-23 1 CL0329 D 160 233 A   
Ribosomal_S3_C Domain P05750_105-188 9.8e-23 1 No_clan E 105 188 A   
KH_2 Domain P05750_20-96 1.9e-11 1 CL0007 E 20 96 A   
RS4NT Domain P0CX35_3-39 1.7e-18 1 No_clan F 3 39 A   
S4 Domain P0CX35_42-90 2.1e-08 1 CL0492 F 42 90 A   
Ribosomal_S7 Domain P26783_76-225 1.5e-37 1 No_clan G 72 225 A   
Ribosomal_S27 Domain P05759_102-147 8.2e-24 1 CL0167 g 102 147 A   
eIF-1a Domain P38912_32-94 4.6e-21 1 CL0021 i 32 94 A   
ABC_tran Domain Q03195_368-496 7.8e-17 1 CL0023 k 368 496   
ABC_tran Domain Q03195_99-250 8.4e-16 1 CL0023 k 99 250 A   
S4 Domain O13516_107-153 3.4e-12 1 CL0492 K 107 153 A   
Fer4 Domain Q03195_48-71 3.5e-07 1 CL0344 k 48 71 A   
S10_plectin Domain Q08745_3-95 1.8e-42 1 CL0123 L 3 92 A   
SUI1 Domain P32911_23-99 5.5e-28 1 No_clan m 22 99 A   
Ribosomal_S17 Domain P0CX47_73-141 8.9e-28 1 CL0021 M 73 141 A   
Ribosomal_L7Ae Domain P48589_26-123 6.4e-23 1 CL0101 N 26 123 A   
Ribosomal_S13_N Domain P05756_2-60 3.6e-27 1 No_clan O 2 60 A   
Ribosomal_S15 Domain P05756_70-149 3.3e-13 1 CL0600 O 70 149   
PCI Domain 3.2e-05 1 CL0123 o 382 493
RRM_1 Domain P06103_93-153 2.4e-07 1 CL0221 p 93 153 A   
Ribosomal_S19 Domain Q01855_43-128 2.8e-31 1 No_clan Q 43 128 A   
PCI Domain P32497_650-780 2.1e-14 1 CL0123 q 650 780   
Ribosomal_S10 Domain P38701_23-117 6.1e-25 1 No_clan V 23 117 A   
Ribosomal_S8 Domain P0C0W1_5-130 1.7e-23 1 No_clan X 5 130 A   
Ribosomal_S25 Family Q3E792_36-104 4.4e-28 1 CL0123 a 36 104 A   
Ribosomal_S26e Family P39938_2-98 2.3e-48 1 No_clan b 2 98 A   
Ribosomal_S2 Family P32905_110-183 2.9e-13 1 CL0067 B 110 183   
Ribosomal_S2 Family P32905_17-116 1e-08 1 CL0067 B 17 116 A   
Ribosomal_S3Ae Family P33442_20-221 8.5e-77 1 No_clan C 20 221 A   
Ribosomal_S27e Family P35997_28-82 5.8e-30 1 CL0167 c 28 82 A   
Ribosomal_S28e Family P0C0X0_5-66 7.2e-32 1 CL0021 d 6 66 A   
Ribosomal_S14 Family P41057_6-56 1.1e-15 1 No_clan e 6 56 A   
Ribosomal_S4e Family P0CX35_95-169 1.1e-37 1 CL0021 F 95 169 A   
40S_S4_C Family P0CX35_212-259 2.9e-26 1 No_clan F 212 259   
Ribosomal_S30 Family P0CX33_7-61 2.4e-23 1 No_clan f 9 61 A   
KOW Family P0CX35_177-211 3.8e-06 1 CL0107 F 177 211 A   
Ribosomal_S6e Family P0CX37_1-126 6.6e-55 1 No_clan H 1 126 A   
Ribosomal_S7e Family P26786_5-185 7.1e-79 1 CL0652 I 5 185 A   
Ribosomal_S8e Family P0CX39_5-184 3.9e-58 1 No_clan J 5 184 A   
RLI Family Q03195_6-37 2.7e-14 1 CL0344 k 6 37 A   
Ribosomal_S17_N Family P0CX47_8-71 9.2e-32 1 No_clan M 8 71 A   
Ribosomal_S11 Family P06367_15-129 3.7e-46 1 CL0267 P 15 133 A   
eIF-3c_N Family P32497_251-640 6e-159 1 No_clan q 212 640 A   
eIF-3c_N Family P32497_113-214 5.1e-24 1 No_clan q 113 252 A   
Ribosomal_S9 Family P0CX51_11-143 9.6e-33 1 CL0329 R 11 143 A   
eIF3g Family Q04067_44-96 1.6e-12 1 CL0511 r 44 96 A   
Ribosomal_S17e Family P02407_2-126 4.2e-54 1 No_clan S 2 122 A   
eIF3_subunit Family Q05775_138-232 4.2e-25 1 No_clan s 138 232 A   
Ribosomal_S13 Family P0CX55_16-144 5.8e-57 1 CL0303 T 16 144 A   
eIF3_subunit Family Q05775_138-221 1.5e-23 1 No_clan t 138 220 A   
Ribosomal_S19e Family P07280_5-142 8.4e-53 1 CL0123 U 5 142 A   
Ribosomal_S21e Family P0C0V8_1-80 4.9e-40 1 No_clan W 1 80   
Ribosom_S12_S23 Family P0CX29_31-144 2.4e-51 1 CL0021 Y 31 144 A   
Ribosomal_S24e Family P0CX31_24-103 7.4e-34 1 No_clan Z 24 103 A   
WD40 Repeat P38011_8-46 3.5e-07 1 CL0186 h 55 93 A   
WD40 Repeat P38011_8-46 2e-06 1 CL0186 h 186 224 A   
WD40 Repeat P38011_8-46 1e-05 1 CL0186 h 97 135 A   
WD40 Repeat P40217_42-80 2.8e-05 1 CL0186 l 42 80 A   
eIF2A Repeat P06103_431-658 4.6e-24 1 CL0186 p 431 658 A   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6zce.pdb1.pdb:   [ download sequences in FASTA format ]
a (protein): 
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b (protein): 
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C (protein): 
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d (protein): 
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E (protein): 
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f (protein): 
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g (protein): 
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h (protein): 
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i (protein): 
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J (protein): 
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K (protein): 
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l (protein): 
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m (protein): 
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N (protein): 
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O (protein): 
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p (protein): 
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Q (protein): 
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R (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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