General information
PDB ID 6ZU9
Title STRUCTURE OF A YEAST ABCE1-BOUND 48S INITIATION COMPLEX
PDB header RIBOSOME
Date 2020-07-22
Experimental method ELECTRON MICROSCOPY
Resolution (A) 6.2
Kind rna
Organism
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PDB PDBe MMDB Jena OCA
CATH PDBsum HSSP PDBePISA UniProt
ProteopediA BIPA
PRIDB
Composition of PDB entry and biounits
File: Protein chains: DNA chains: RNA chains: No. of models: Action:
PDB entry:
pdb6zu9.pdb PQRSTUVWXYZabcdefgEBCDFHIJKLMNOhilrmopqAk 213 0
Biounits:
6zu9.pdb1.pdb PQRSTUVWXYZabcdefgEBCDFHIJKLMNOhilrmopqAk 213 1
Pfam domains
Name: Type: Domain: E-value: Significance: Clan: Prot. chain: Start res.: End res.: Nuc. chains: Int. mode: Action:
eIF-1a Domain P38912_32-94 1.8e-15 1 CL0021 A 32 94 2   
Ribosomal_S8 Domain P0C0W1_5-130 1.7e-23 1 No_clan b 5 130 2   
Ribosomal_S3_C Domain P05750_105-188 9.7e-23 1 No_clan B 105 188 2   
KH_2 Domain P05750_20-96 1.9e-11 1 CL0007 B 20 96 2   
Ribosomal_S7 Domain P26783_76-225 1.5e-37 1 No_clan C 72 225 2   
S10_plectin Domain Q08745_3-95 1.8e-42 1 CL0123 D 3 92 2   
Ribosomal_S19 Domain Q01855_43-128 2.5e-31 1 No_clan E 43 128 2   
Ribosomal_L7Ae Domain P48589_26-123 6.6e-23 1 CL0101 F 26 123 2   
ABC_tran Domain Q03195_368-496 7.8e-17 1 CL0023 k 368 496   
ABC_tran Domain Q03195_99-250 8.4e-16 1 CL0023 k 99 250 2   
Fer4 Domain Q03195_48-71 3.5e-07 1 CL0344 k 48 71 2   
Ribosomal_S10 Domain P38701_23-117 5e-25 1 No_clan L 23 117 2   
Ribosomal_S27 Domain P05759_102-147 8.9e-24 1 CL0167 O 102 147   
PCI Domain 3.2e-05 1 CL0123 o 382 493
RRM_1 Domain P06103_93-153 2.4e-07 1 CL0221 p 93 153 2   
PCI Domain P32497_650-780 2.1e-14 1 CL0123 q 650 780   
Ribosomal_S5 Domain P25443_76-140 7.2e-26 1 CL0196 R 76 140 2   
Ribosomal_S5_C Domain P25443_160-233 9.4e-23 1 CL0329 R 160 233 2   
RS4NT Domain P0CX35_3-39 1.7e-18 1 No_clan S 3 39 2   
S4 Domain P0CX35_42-90 2.1e-08 1 CL0492 S 42 90 2   
S4 Domain O13516_107-153 3.4e-12 1 CL0492 W 107 153 2   
Ribosomal_S17 Domain P0CX47_73-141 8.9e-28 1 CL0021 X 73 141 2   
Ribosomal_S13_N Domain P05756_2-60 3.6e-27 1 No_clan Y 2 60 2   
Ribosomal_S15 Domain P05756_70-149 3.3e-13 1 CL0600 Y 70 149   
Ribosomal_S21e Family P0C0V8_1-80 4.9e-40 1 No_clan a 1 80 2   
Ribosom_S12_S23 Family P0CX29_31-144 2.4e-51 1 CL0021 c 31 144 2   
Ribosomal_S24e Family P0CX31_24-103 7.4e-34 1 No_clan d 24 103 2   
Ribosomal_S26e Family P39938_2-98 2.3e-48 1 No_clan e 2 98 2   
Ribosomal_S27e Family P35997_28-82 5.8e-30 1 CL0167 f 28 82 2   
Ribosomal_S30 Family P0CX33_7-61 2.4e-23 1 No_clan g 9 61 2   
Ribosomal_S9 Family P0CX51_11-143 9.6e-33 1 CL0329 H 11 143 2   
Ribosomal_S17e Family P02407_2-126 3.4e-57 1 No_clan I 2 125 2   
Ribosomal_S28e Family P0C0X0_5-66 5.6e-32 1 CL0021 i 5 66 2   
Ribosomal_S13 Family P0CX55_16-144 5.8e-57 1 CL0303 J 16 144 2   
Ribosomal_S19e Family P07280_5-142 8.4e-53 1 CL0123 K 5 142 2   
RLI Family Q03195_6-37 2.7e-14 1 CL0344 k 6 37 2   
eIF-5_eIF-2B Family P38431_6-127 1.7e-38 1 CL0123 m 6 127 12   
Ribosomal_S25 Family Q3E792_24-104 1.6e-34 1 CL0123 M 24 104 12   
Ribosomal_S14 Family P41057_6-56 1.1e-15 1 No_clan N 6 56 2   
Ribosomal_S2 Family P32905_110-183 2.9e-13 1 CL0067 P 110 183   
Ribosomal_S2 Family P32905_17-116 1e-08 1 CL0067 P 17 116 2   
eIF-3c_N Family P32497_251-640 6e-159 1 No_clan q 212 640 2   
Ribosomal_S3Ae Family P33442_20-221 4.2e-78 1 No_clan Q 9 221 2   
eIF-3c_N Family P32497_113-214 5.1e-24 1 No_clan q 113 252 2   
eIF3g Family Q04067_44-96 1.6e-12 1 CL0511 r 44 96 2   
Ribosomal_S4e Family P0CX35_95-169 1.1e-37 1 CL0021 S 95 169 2   
40S_S4_C Family P0CX35_212-259 2.9e-26 1 No_clan S 212 259   
KOW Family P0CX35_177-211 3.7e-06 1 CL0107 S 177 211   
Ribosomal_S6e Family P0CX37_1-126 6.7e-55 1 No_clan T 1 126 2   
Ribosomal_S7e Family P26786_5-185 7.1e-79 1 CL0652 U 5 185 2   
Ribosomal_S8e Family P0CX39_5-184 3.9e-58 1 No_clan V 5 184 2   
Ribosomal_S17_N Family P0CX47_8-71 9.2e-32 1 No_clan X 8 71 2   
Ribosomal_S11 Family P06367_15-129 3.7e-46 1 CL0267 Z 15 133 2   
WD40 Repeat P38011_8-46 3.4e-07 1 CL0186 h 55 93 2   
WD40 Repeat P38011_8-46 2e-06 1 CL0186 h 186 224   
WD40 Repeat P38011_8-46 1e-05 1 CL0186 h 97 135 2   
WD40 Repeat P40217_42-80 2.8e-05 1 CL0186 l 42 80 2   
eIF2A Repeat P06103_431-658 4.6e-24 1 CL0186 p 431 658 2   
SCOP domains
No SCOP domains
GO terms
No GO terms
Sequences
Download file with secondary structure created by Stride  
6zu9.pdb1.pdb:   [ download sequences in FASTA format ]
A (protein): 
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B (protein): 
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C (protein): 
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D (protein): 
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e (protein): 
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f (protein): 
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g (protein): 
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H (protein): 
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I (protein): 
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J (protein): 
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K (protein): 
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L (protein): 
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M (protein): 
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N (protein): 
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O (protein): 
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P (protein): 
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q (protein): 
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r (protein): 
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S (protein): 
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T (protein): 
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U (protein): 
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V (protein): 
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W (protein): 
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X (protein): 
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Y (protein): 
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Z (protein): 
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1 (rna): 
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2 (rna): 
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3 (rna): 
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