General information
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| PDB ID | 9ICE |
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| Title | DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SEVEN BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF DATP (1 MILLIMOLAR) AND CUCL2 (0.1 MILLIMOLAR) | ||||
| PDB header | TRANSFERASE/DNA | ||||
| Date | 1995-12-15 | ||||
| Experimental method | X-RAY DIFFRACTION | ||||
| Resolution (A) | 3.3 | ||||
| Kind | dna | ||||
| Organism | HOMO SAPIENS | ||||
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Quick Links
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Composition of PDB entry and biounits
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| File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
| PDB entry: | |||||
| pdb9ice.pdb | A | TP | 0 |
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| Biounits: | |||||
| 9ice.pdb1.pdb | A | TP | 1 |
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Pfam domains
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| Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
DNA_pol_B_palm
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Domain | P06746_149-262 | 1.1e-39 | 1 |
CL0260
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A | 149 | 262 | PT | S-Bb L-Bb |
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DNA_pol_lambd_f
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Domain | P06746_98-147 | 4.5e-19 | 1 |
CL0198
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A | 98 | 147 | PT | H-Bb L-Bb |
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HHH_8
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Domain | P06746_12-78 | 3.8e-18 | 1 |
CL0198
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A | 12 | 78 |
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DNA_pol_B_thumb
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Family | P06746_268-334 | 1.7e-17 | 1 | No_clan | A | 268 | 334 |
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SCOP domains
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| Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Class: All alpha proteins
Fold: SAM domain-like
Superfamily: DNA polymerase beta, N-terminal domain-like
Family: DNA polymerase beta, N-terminal domain-like
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DNA polymerase beta, N-terminal (8 kD)-domain | A | 9 | 91 | - |
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Class: All alpha proteins
Fold: SAM domain-like
Superfamily: PsbU/PolX domain-like
Family: DNA polymerase beta-like, second domain
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DNA polymerase beta | A | 92 | 148 | PT | - |
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Class: Alpha and beta proteins (a+b)
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: DNA polymerase beta-like
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DNA polymerase beta, catalytic (31 kD) fragment | A | 149 | 335 | PT | - |
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| GO terms | ||
| Protein chains: | GO type: | GO description: |
| A=1-335 | C | cytoplasm |
| A=1-335 | C | microtubule |
| A=1-335 | C | nucleoplasm |
| A=1-335 | C | nucleus |
| A=1-335 | C | protein-containing complex |
| A=1-335 | C | spindle microtubule |
| A=1-335 | F | damaged DNA binding |
| A=1-335 | F | DNA-(apurinic or apyrimidinic site) endonuclease activity |
| A=1-335 | F | DNA-directed DNA polymerase activity |
| A=1-335 | F | enzyme binding |
| A=1-335 | F | lyase activity |
| A=1-335 | F | metal ion binding |
| A=1-335 | F | microtubule binding |
| A=1-335 | P | aging |
| A=1-335 | P | base-excision repair |
| A=1-335 | P | base-excision repair, base-free sugar-phosphate removal |
| A=1-335 | P | base-excision repair, DNA ligation |
| A=1-335 | P | base-excision repair, gap-filling |
| A=1-335 | P | cellular response to DNA damage stimulus |
| A=1-335 | P | DNA repair |
| A=1-335 | P | DNA-dependent DNA replication |
| A=1-335 | P | double-strand break repair via nonhomologous end joining |
| A=1-335 | P | homeostasis of number of cells |
| A=1-335 | P | immunoglobulin heavy chain V-D-J recombination |
| A=1-335 | P | inflammatory response |
| A=1-335 | P | intrinsic apoptotic signaling pathway in response to DNA damage |
| A=1-335 | P | lymph node development |
| A=1-335 | P | neuron apoptotic process |
| A=1-335 | P | protein deubiquitination |
| A=1-335 | P | pyrimidine dimer repair |
| A=1-335 | P | response to ethanol |
| A=1-335 | P | response to gamma radiation |
| A=1-335 | P | response to hyperoxia |
| A=1-335 | P | salivary gland morphogenesis |
| A=1-335 | P | somatic hypermutation of immunoglobulin genes |
| A=1-335 | P | spleen development |
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Sequences
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Download file with secondary structure created by Stride
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9ice.pdb1.pdb:
[
download sequences in FASTA format
]
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P (dna):
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T (dna):
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A (protein):
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