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Composition of PDB entry and biounits
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File: | Protein chains: | DNA chains: | RNA chains: | No. of models: | Action: |
PDB entry: | |||||
pdb9ice.pdb | A | TP | 0 |
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Biounits: | |||||
9ice.pdb1.pdb | A | TP | 1 |
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Pfam domains
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Name: | Type: | Domain: | E-value: | Significance: | Clan: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
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Domain | P06746_149-262 | 1.1e-39 | 1 |
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A | 149 | 262 | PT | S-Bb L-Bb |
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Domain | P06746_98-147 | 4.5e-19 | 1 |
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A | 98 | 147 | PT | H-Bb L-Bb |
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Domain | P06746_12-78 | 3.8e-18 | 1 |
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A | 12 | 78 |
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Family | P06746_268-334 | 1.7e-17 | 1 | No_clan | A | 268 | 334 |
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SCOP domains
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Classification: | Protein: | Prot. chain: | Start res.: | End res.: | Nuc. chains: | Int. mode: | Action: |
DNA polymerase beta, N-terminal (8 kD)-domain | A | 9 | 91 | - |
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DNA polymerase beta | A | 92 | 148 | PT | - |
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DNA polymerase beta, catalytic (31 kD) fragment | A | 149 | 335 | PT | - |
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GO terms | ||
Protein chains: | GO type: | GO description: |
A=1-335 | C | cytoplasm |
A=1-335 | C | microtubule |
A=1-335 | C | nucleoplasm |
A=1-335 | C | nucleus |
A=1-335 | C | protein-containing complex |
A=1-335 | C | spindle microtubule |
A=1-335 | F | damaged DNA binding |
A=1-335 | F | DNA-(apurinic or apyrimidinic site) endonuclease activity |
A=1-335 | F | DNA-directed DNA polymerase activity |
A=1-335 | F | enzyme binding |
A=1-335 | F | lyase activity |
A=1-335 | F | metal ion binding |
A=1-335 | F | microtubule binding |
A=1-335 | P | aging |
A=1-335 | P | base-excision repair |
A=1-335 | P | base-excision repair, base-free sugar-phosphate removal |
A=1-335 | P | base-excision repair, DNA ligation |
A=1-335 | P | base-excision repair, gap-filling |
A=1-335 | P | cellular response to DNA damage stimulus |
A=1-335 | P | DNA repair |
A=1-335 | P | DNA-dependent DNA replication |
A=1-335 | P | double-strand break repair via nonhomologous end joining |
A=1-335 | P | homeostasis of number of cells |
A=1-335 | P | immunoglobulin heavy chain V-D-J recombination |
A=1-335 | P | inflammatory response |
A=1-335 | P | intrinsic apoptotic signaling pathway in response to DNA damage |
A=1-335 | P | lymph node development |
A=1-335 | P | neuron apoptotic process |
A=1-335 | P | protein deubiquitination |
A=1-335 | P | pyrimidine dimer repair |
A=1-335 | P | response to ethanol |
A=1-335 | P | response to gamma radiation |
A=1-335 | P | response to hyperoxia |
A=1-335 | P | salivary gland morphogenesis |
A=1-335 | P | somatic hypermutation of immunoglobulin genes |
A=1-335 | P | spleen development |
Sequences
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9ice.pdb1.pdb:
[
download sequences in FASTA format
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P (dna):
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T (dna):
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A (protein):
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