Interaction class
Class: Miscellaneous
Description: Conserved protein-DNA contacts are provided by miscellaneous atoms.
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SCOP Domain Family Number of structures Number of domains Interaction modes Ax-bend MnG width MnG depth MjG width MjG depth
Classic zinc finger, C2H2
(g.37.1.1)
95 22  H-Bb 
 H-Bb H-Mj 
 H-Bb H-Mj L-Bb 
 H-Bb H-Mj L-Bb L-Mj 
 H-Bb H-Mj L-Bb L-Mj L-Mn 
 H-Bb H-Mj L-Mj 
 H-Bb H-Mj S-Bb 
 H-Bb H-Mj S-Bb L-Bb L-Mj 
 H-Bb H-Mj S-Bb L-Mj 
 H-Bb L-Bb 
 L-Bb 
 L-Bb L-Mn 
0.7 (0.1–2.2) 7.5 (6.2–9.0) 4.4 (3.8–5.1) 11.3 (10.0–12.6) 2.0 (-0.6–4.5)
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(b.1.18.1)
56 9  L-Bb 
 S-Bb 
 S-Bb L-Bb 
C-terminal, Zn-finger domain of MutM-like DNA repair proteins
(g.39.1.8)
27 4  L-Bb 
 L-Bb L-Mj 
 S-Bb 
 S-Bb L-Bb 
 S-Mj L-Bb 
0.3 (0.3–0.4)
Middle domain of MutM-like DNA repair proteins
(a.156.1.2)
21 4  H-Bb 
 L-Bb 
 L-Mn 
0.2
All SCOP domain families with determined protein-DNA interaction classes
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