Interaction class
Class: Miscellaneous
Description: Conserved protein-DNA contacts are provided by miscellaneous atoms.
Pfam families with interaction class Miscellaneous
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Pfam Domain Family Number of structures Number of domains Interaction modes
TAL_effector
(PF03377.12)
461 29  L-Bb L-Mj 
 L-Mj 
 H-Bb 
 H-Bb L-Bb L-Mj 
 H-Bb L-Mj 
IMS
(PF00817.19)
253 5  H-Bb S-Bb 
 H-Bb S-Bb L-Bb 
 H-Bb S-Bb S-Mj S-Mn L-Bb L-Mj L-Mn 
 L-Bb 
RNA_pol_Rpb1_1
(PF04997.11)
171 6  H-Bb 
 H-Bb H-Mj L-Bb 
 H-Bb L-Bb L-Mj 
 H-Bb S-Bb 
 L-Bb 
DNA_pol_B_exo1
(PF03104.18)
170 6  H-Bb 
 L-Bb 
 L-Bb L-Mj 
 L-Mj 
RHD_dimer
(PF16179.4)
63 8  L-Bb 
 S-Bb 
 S-Bb L-Bb 
UvrD_C
(PF13361.5)
28 4  H-Bb H-Mn L-Bb 
 H-Bb L-Bb L-Mn 
 H-Bb L-Mn 
 L-Bb 
CBFD_NFYB_HMF
(PF00808.22)
5 5  H-Bb 
 H-Bb H-Mj S-Bb L-Bb 
 H-Bb S-Bb 
 L-Bb 
All Pfam and SCOP domain families with determined protein-DNA interaction classes
SCOP families with interaction class Miscellaneous
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family Number of structures Number of domains Interaction modes Ax-bend MnG width MnG depth MjG width MjG depth
Classic zinc finger, C2H2
(g.37.1.1)
95 22  H-Bb 
 H-Bb H-Mj 
 H-Bb H-Mj L-Bb 
 H-Bb H-Mj L-Bb L-Mj 
 H-Bb H-Mj L-Bb L-Mj L-Mn 
 H-Bb H-Mj L-Mj 
 H-Bb H-Mj S-Bb 
 H-Bb H-Mj S-Bb L-Bb L-Mj 
 H-Bb H-Mj S-Bb L-Mj 
 H-Bb L-Bb 
 L-Bb 
 L-Bb L-Mn 
0.7 (0.1–2.2) 7.5 (6.2–9.0) 4.4 (3.8–5.1) 11.3 (10.0–12.6) 2.0 (-0.6–4.5)
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(b.1.18.1)
56 9  L-Bb 
 S-Bb 
 S-Bb L-Bb 
C-terminal, Zn-finger domain of MutM-like DNA repair proteins
(g.39.1.8)
27 4  L-Bb 
 L-Bb L-Mj 
 S-Bb 
 S-Bb L-Bb 
 S-Mj L-Bb 
0.3 (0.3–0.4)
Middle domain of MutM-like DNA repair proteins
(a.156.1.2)
21 4  H-Bb 
 L-Bb 
 L-Mn 
0.2
All Pfam and SCOP domain families with determined protein-DNA interaction classes
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