Interaction class
Class:  H-Bb H-Mj S-Bb L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb).
Pfam families with interaction class  H-Bb H-Mj S-Bb L-Bb 
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Pfam Domain Family Number of structures Number of domains Interaction modes
Trans_reg_C
(PF00486.27)
43 5  H-Bb H-Mj S-Bb L-Bb 
 H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
 H-Bb H-Mj S-Bb L-Bb L-Mn 
Arg_repressor
(PF01316.20)
23 3  H-Bb H-Mj S-Bb L-Bb 
HSF_DNA-bind
(PF00447.16)
16 4  H-Bb H-Mj S-Bb L-Bb 
 H-Bb H-Mj S-Bb L-Bb L-Mj 
Penicillinase_R
(PF03965.15)
8 3  H-Bb H-Mj S-Bb L-Bb 
 H-Bb H-Mj S-Bb S-Mj L-Bb 
All Pfam and SCOP domain families with determined protein-DNA interaction classes
SCOP families with interaction class  H-Bb H-Mj S-Bb L-Bb 
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family Number of structures Number of domains Interaction modes Ax-bend MnG width MnG depth MjG width MjG depth
Viral DNA-binding domain
(d.58.8.1)
9 4  H-Bb H-Mj L-Bb 
 H-Bb H-Mj S-Bb 
 H-Bb H-Mj S-Bb L-Bb 
 H-Bb H-Mj S-Bb L-Bb L-Mn 
2.8 (2.1–3.9) 7.1 (6.3–8.8) 4.6 (4.0–5.0) 8.4 5.2
All Pfam and SCOP domain families with determined protein-DNA interaction classes
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