Interaction class
Class:  H-Bb H-Mj S-Bb L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the major groove of DNA (Mj), β-strand(s) (S) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb).
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SCOP Domain Family Number of structures Number of domains Interaction modes Ax-bend MnG width MnG depth MjG width MjG depth
Viral DNA-binding domain
(d.58.8.1)
9 4  H-Bb H-Mj L-Bb 
 H-Bb H-Mj S-Bb 
 H-Bb H-Mj S-Bb L-Bb 
 H-Bb H-Mj S-Bb L-Bb L-Mn 
2.8 (2.1–3.9) 7.1 (6.3–8.8) 4.6 (4.0–5.0) 8.4 5.2
All SCOP domain families with determined protein-DNA interaction classes
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