Interaction class
Class:  H-Bb H-Mn L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), helix(es) (H) with the minor groove of DNA (Mn), loop(s) (L) with DNA backbone atoms (Bb).
SCOP families with interaction class  H-Bb H-Mn L-Bb 
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
Export table
SCOP Domain Family Number of structures Number of domains Interaction modes Ax-bend MnG width MnG depth MjG width MjG depth
HMG-box
(a.21.1.1)
14 8  H-Bb H-Mn L-Bb 
 H-Bb H-Mn L-Bb L-Mn 
 H-Bb L-Bb L-Mn 
 H-Mn L-Bb L-Mn 
5.1 (3.5–8.1) 10.9 (10.1–11.2) 1.2 (-0.1–2.0) 10.6 (9.6–11.4) 4.8 (0.4–7.5)
All Pfam and SCOP domain families with determined protein-DNA interaction classes
© NPIDB team 2003 - 2018

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