Interaction class
Class:  H-Bb L-Bb 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb).
Pfam families with interaction class  H-Bb L-Bb 
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Pfam Domain Family Number of structures Number of domains Interaction modes
IMS_HHH
(PF11798.7)
201 3  H-Bb H-Mj L-Bb 
 H-Bb L-Bb 
MethyltransfD12
(PF02086.14)
26 3  H-Bb H-Mj H-Mn L-Bb L-Mj 
 H-Bb L-Bb 
 H-Bb S-Bb L-Bb L-Mj 
UvrD-helicase
(PF00580.20)
24 4  H-Bb L-Bb 
 H-Bb L-Bb L-Mn 
Topo_C_assoc
(PF14370.5)
14 4  H-Bb H-Mj L-Bb 
 H-Bb L-Bb 
HHH_6
(PF14579.5)
11 3  H-Bb L-Bb 
All Pfam and SCOP domain families with determined protein-DNA interaction classes
SCOP families with interaction class  H-Bb L-Bb 
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family Number of structures Number of domains Interaction modes Ax-bend MnG width MnG depth MjG width MjG depth
Restriction endonuclease FokI, N-terminal (recognition) domain
(a.4.5.12)
3 3  H-Bb H-Mj L-Bb L-Mj L-Mn 
 H-Bb H-Mj S-Bb L-Bb L-Mj 
 H-Bb L-Bb 
1.1 (0.8–1.4) 12.6 -0.4
All Pfam and SCOP domain families with determined protein-DNA interaction classes
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