Interaction class
Class:  H-Bb L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
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SCOP Domain Family Number of structures Number of domains Interaction modes Ax-bend MnG width MnG depth MjG width MjG depth
Rel/Dorsal transcription factors, DNA-binding domain
54 8  H-Bb H-Mj L-Bb L-Mj 
 H-Bb H-Mj L-Bb L-Mj L-Mn 
 H-Bb H-Mj S-Bb L-Bb L-Mj 
 H-Bb H-Mj S-Bb L-Bb L-Mj L-Mn 
 H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
 H-Bb H-Mj S-Bb S-Mj L-Mj 
 H-Bb L-Bb L-Mj 
 H-Bb S-Bb L-Bb L-Mj 
 H-Bb S-Bb L-Bb L-Mj L-Mn 
 H-Bb S-Bb S-Mj L-Bb L-Mj 
 L-Bb L-Mj 
 S-Bb S-Mj L-Bb 
 S-Bb S-Mj L-Bb L-Mj 
 S-Mj L-Bb L-Mj 
1.2 (0.6–1.8) 5.0 (3.6–5.8) 5.3 (5.1–5.5) 12.1 (11.5–12.7) 4.4 (3.8–5.0)
All SCOP domain families with determined protein-DNA interaction classes
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