Interaction class
Class:  H-Bb S-Bb S-Mj L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by helix(es) (H) with DNA backbone atoms (Bb), β-strand(s) (S) with DNA backbone atoms (Bb), β-strand(s) (S) with the major groove of DNA (Mj), loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam families with interaction class  H-Bb S-Bb S-Mj L-Bb L-Mj 
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Pfam Domain Family Number of structures Number of domains Interaction modes
LAGLIDADG_1
(PF00961.18)
129 24  H-Bb S-Bb S-Mj L-Bb L-Mj 
MH1
(PF03165.15)
20 4  H-Bb S-Bb S-Mj L-Bb L-Mj 
T_Ag_DNA_bind
(PF02217.15)
18 4  H-Bb S-Bb S-Mj L-Bb L-Mj 
MazE_antitoxin
(PF04014.17)
10 3  H-Bb S-Bb S-Mj L-Bb L-Mj 
All Pfam and SCOP domain families with determined protein-DNA interaction classes
SCOP families with interaction class  H-Bb S-Bb S-Mj L-Bb L-Mj 
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family Number of structures Number of domains Interaction modes Ax-bend MnG width MnG depth MjG width MjG depth
Group I mobile intron endonuclease
(d.95.2.1)
40 7  H-Bb S-Bb S-Mj L-Bb L-Mj 
 H-Bb S-Bb S-Mj L-Bb L-Mj L-Mn 
 H-Bb S-Mj L-Bb L-Mj 
1.8 (0.5–2.9) 6.2 (5.0–7.1) 4.9 (4.2–5.6) 13.9 (12.9–15.1) 4.2 (2.3–5.8)
All Pfam and SCOP domain families with determined protein-DNA interaction classes
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