Interaction class
Class:  L-Bb 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb).
Pfam families with interaction class  L-Bb 
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Pfam Domain Family Number of structures Number of domains Interaction modes
HIN
(PF02760.14)
17 4  H-Bb H-Mj L-Bb 
 H-Bb S-Bb L-Bb 
 H-Bb S-Bb L-Bb L-Mj 
 S-Bb L-Bb 
XPG_I
(PF00867.17)
10 3  L-Bb 
ResIII
(PF04851.14)
8 3  H-Bb L-Bb 
 H-Bb S-Bb L-Bb 
 L-Bb L-Mn 
All Pfam and SCOP domain families with determined protein-DNA interaction classes
SCOP families with interaction class  L-Bb 
Note: this data is based only on structures available at the moment of the last SCOP release (2009)
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SCOP Domain Family Number of structures Number of domains Interaction modes Ax-bend MnG width MnG depth MjG width MjG depth
DnaQ-like 3'-5' exonuclease
(c.55.3.5)
127 9  H-Bb 
 H-Bb L-Bb 
 H-Bb L-Mj 
 H-Mn L-Bb 
 L-Bb 
 L-Bb L-Mj L-Mn 
 L-Mj 
 S-Bb S-Mj S-Mn L-Bb L-Mj 
All Pfam and SCOP domain families with determined protein-DNA interaction classes
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