Interaction class
Class:  L-Bb L-Mj 
Description: Conserved protein-DNA contacts are provided by loop(s) (L) with DNA backbone atoms (Bb), loop(s) (L) with the major groove of DNA (Mj).
Pfam families with interaction class  L-Bb L-Mj 
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Pfam Domain Family Number of structures Number of domains Interaction modes
RHD_DNA_bind
(PF00554.21)
71 11  H-Bb H-Mj S-Bb S-Mj L-Bb L-Mj 
 H-Bb H-Mj S-Mj L-Bb L-Mj 
 H-Bb L-Bb L-Mj 
 H-Bb S-Bb S-Mj L-Bb L-Mj L-Mn 
 L-Bb L-Mj 
  
zf-CXXC
(PF02008.19)
24 11  H-Bb H-Mj L-Bb L-Mj 
 H-Bb L-Bb L-Mj 
 H-Bb L-Bb L-Mj L-Mn 
 H-Mj L-Bb L-Mj 
 L-Bb L-Mj 
 L-Bb L-Mj L-Mn 
 S-Bb L-Bb L-Mj 
 S-Bb L-Bb L-Mj L-Mn 
LAG1-DNAbind
(PF09271.10)
16 4  L-Bb L-Mj 
All Pfam and SCOP domain families with determined protein-DNA interaction classes
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