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Nucleic atom dist Protein atom
DG103:B.N2/1 2.85 SER31:A.OG/1
DG103:B.N3/1 2.93 TRP24:A.NE1/1
5IU105:B.OP1/1 3.09 LYS22:A.NZ/1
DC106:B.O2/1 2.91 ARG43:A.NH1/1
DC114:C.OP1/1 2.71 LYS9:A.N/1
DG115:C.N2/1 3.1 VAL26:A.O/1
DC116:C.OP1/1 2.59 SER47:A.OG/1
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Nucleic atom d_n2w water d_p2w Protein atom
DC106:B.O2/1 2.62 112:B/1 2.8 ARG43:A.NH2/1
DG107:B.OP2/1 2.61 110:B/1 2.86 THR41:A.N/1
DA112:C.N3/1 2.92 48:C/1 3.2 LYS9:A.NZ/1
DA113:C.N3/1 2.77 65:A/1 2.71 TYR8:A.OH/1
DG115:C.OP1/1 2.73 50:C/1 2.91 LYS7:A.O/1
DG115:C.OP1/1 2.81 8:C/1 2.82 ALA45:A.O/1
DG115:C.N2/1 3.47 81:A/1 3.09 LYS28:A.N/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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