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Nucleic atom dist Protein atom
C20:B.O2'/1 2.44 GLN27:A.NE2/1
G21:B.O2'/1 2.78 THR21:A.O/1
G22:B.OP1/1 3.19 LYS7:A.NZ/1
G30:B.N2/1 3.2 SER51:A.OG/1
G31:B.O2'/1 2.73 ASP48:A.OD1/1
G31:B.N2/1 3.01 ASP48:A.OD2/1
G31:B.N3/1 3.11 ASP48:A.OD1/1
C32:B.O3'/1 3 LYS47:A.NZ/1
U33:B.OP1/1 2.51 LYS47:A.NZ/1
C38:B.O2'/1 2.51 HIS41:A.ND1/1
U39:B.OP1/1 3.42 PRO1:A.N/1
U39:B.O2'/1 2.73 SER51:A.OG/1
G41:B.OP2/1 2.74 ARG34:A.NH2/1
G49:B.O2'/1 3.33 GLY22:A.N/1
G49:B.N2/1 2.9 GLY22:A.O/1
U50:B.O3'/1 3.31 ARG16:A.NH1/1
A52:B.OP1/1 2.92 TYR68:A.OH/1
C53:B.OP1/1 3.3 ARG71:A.NH2/1
G54:B.OP2/1 3.37 ARG64:A.NH1/1
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Nucleic atom d_n2w water d_p2w Protein atom
U50:B.O2'/1 2.83 1019:A/1 3 SER23:A.O/1
U50:B.O2'/1 2.83 1019:A/1 2.49 THR24:A.OG1/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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