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Nucleic atom dist Protein atom
U2:B.O2'/1 3.19 ARG166:A.NH2/1
A3:B.N7/1 3.44 ALA203:A.O/1
A3:B.N6/1 2.67 LYS201:A.NZ/1
U4:B.O4/1 2.95 ASN126:A.ND2/1
U5:B.OP1/1 3.01 ARG155:A.NH1/1
U5:B.O3'/1 2.97 LYS108:A.NZ/1
U5:B.O2'/1 3.07 LYS108:A.NZ/1
U5:B.O2/1 2.96 THR109:A.N/1
U5:B.N3/1 2.54 THR109:A.O/1
U6:B.OP1/1 2.99 LYS108:A.NZ/1
A7:B.N6/1 2.74 GLN48:A.OE1/1
U8:B.OP1/1 2.69 ARG172:A.NH2/1
U8:B.O4'/1 2.95 ASN44:A.OD1/1
U8:B.O2/1 3 ARG116:A.NH2/1
U9:B.O2'/1 2.71 SER118:A.OG/1
U9:B.N3/1 2.8 ARG116:A.O/1
U9:B.O4/1 2.83 ARG116:A.N/1
U9:B.O4/1 3.09 ARG116:A.NE/1
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Nucleic atom d_n2w water d_p2w Protein atom
U2:B.O4/1 2.49 21:B/1 3.01 ARG166:A.O/1
U2:B.O4/1 2.49 21:B/1 2.99 GLY167:A.O/1
U4:B.N3/1 3.24 209:A/1 2.54 ASN126:A.OD1/1
U5:B.OP1/1 3.06 256:A/1 3.16 VAL158:A.N/1
U5:B.OP1/1 3.06 256:A/1 2.98 VAL158:A.O/1
U5:B.OP2/1 3.07 256:A/1 3.16 VAL158:A.N/1
U5:B.OP2/1 3.07 256:A/1 2.98 VAL158:A.O/1
U5:B.O4/1 2.91 13:B/1 2.95 ILE110:A.O/1
A7:B.OP1/1 2.75 213:A/1 2.57 TYR45:A.OH/1
U8:B.OP1/1 2.73 213:A/1 2.57 TYR45:A.OH/1
U8:B.OP2/1 2.64 12:B/1 3.05 ASN44:A.OD1/1
U8:B.OP2/1 2.64 12:B/1 3.02 TYR45:A.N/1
U8:B.OP2/1 3.09 262:A/1 2.6 LEU80:A.O/1
U8:B.N3/1 2.91 206:A/1 2.89 SER113:A.OG/1
U9:B.OP2/1 2.61 14:B/1 3.04 ASP124:A.N/1
U9:B.O4/1 2.8 205:A/1 3.15 ARG116:A.NE/1
U10:B.OP2/1 2.79 283:A/1 2.49 SER118:A.OG/1
U10:B.N3/1 3.12 207:A/1 2.81 ASN40:A.OD1/1
U10:B.O4/1 3.02 227:A/1 2.86 ARG116:A.O/1
A11:B.OP1/1 3.13 289:A/1 2.97 ARG72:A.N/1
A11:B.OP2/1 2.79 15:B/1 2.83 ARG72:A.O/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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