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Nucleic atom dist Protein atom
DA407:B.N3/1 2.92 GLN69:A.NE2/1
DT408:B.OP1/1 2.81 ARG90:A.NH1/1
DT408:B.OP1/1 2.87 ARG90:A.NH2/1
DC409:B.OP1/1 2.87 VAL88:A.N/1
DC409:B.OP1/1 2.65 SER104:A.OG/1
DA426:C.OP1/1 2.86 LYS246:A.NZ/1
DG428:C.OP1/1 2.67 LYS52:A.NZ/1
DG428:C.OP2/1 3 ASN168:A.N/1
DG428:C.OP2/1 2.76 ARG252:A.NH2/1
DG428:C.N2/1 3.13 GLN69:A.NE2/1
DA429:C.OP1/1 2.73 HIS67:A.NE2/1
DA429:C.OP2/1 2.79 LYS52:A.NZ/1
DA430:C.OP2/1 2.71 ARG124:A.NH1/1
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Nucleic atom d_n2w water d_p2w Protein atom
DC409:B.OP2/1 2.46 796:B/1 2.72 THR86:A.O/1
DC410:B.OP2/1 2.76 936:A/1 2.48 THR86:A.OG1/1
DA426:C.OP1/1 2.69 718:A/1 2.6 TYR255:A.OH/1
DA426:C.O3'/1 3.19 695:A/1 2.69 HIS231:A.NE2/1
DA426:C.O3'/1 3.09 809:A/1 2.92 HIS231:A.NE2/1
DG428:C.OP2/1 2.7 674:A/1 2.52 ARG252:A.NH1/1
DA429:C.OP1/1 2.85 617:A/1 2.85 LYS52:A.N/1
DA429:C.OP1/1 2.85 617:A/1 2.67 GLN160:A.OE1/1
DA429:C.OP2/1 2.68 624:C/1 2.76 LEU158:A.O/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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