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Nucleic atom dist Protein atom
DG401:G.O5'/1 3.19 LYS149:C.NZ/1
DG401:G.O4'/1 3.23 LYS149:C.NZ/1
DT404:G.OP2/1 2.98 GLN257:C.NE2/1
DC407:G.OP1/1 3.03 ARG31:C.NH1/1
DC407:G.O3'/1 2.99 ARG109:C.NH2/1
DC407:G.O2/1 2.62 ARG108:C.NE/1
DC407:G.N3/1 3.24 ARG108:C.NH2/1
DT408:G.OP1/1 3.41 ARG109:C.NH1/1
DT408:G.O3'/1 3.12 HIS89:C.NE2/1
DC409:G.OP1/1 2.61 LYS88:C.NZ/1
DC409:G.OP1/1 3.2 HIS89:C.NE2/1
DG428:K.OP1/1 2.69 LYS56:C.NZ/1
DG428:K.OP2/1 3.04 ASN168:C.N/1
DG428:K.OP2/1 2.77 ARG258:C.NH2/1
DG428:K.N2/1 3.36 ARG33:C.NH1/1
DG428:K.N3/1 3.48 ARG33:C.NH1/1
DA429:K.OP1/1 2.97 HIS70:C.NE2/1
DA429:K.OP2/1 3 LYS56:C.NZ/1
DA429:K.OP2/1 3.13 ASN160:C.ND2/1
DA429:K.N3/1 2.91 ARG33:C.NH2/1
DA430:K.O4'/1 2.93 ARG33:C.NH2/1
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Nucleic atom d_n2w water d_p2w Protein atom
DG402:G.OP1/1 2.6 649:G/1 2.8 ALA152:C.N/1
DG402:G.OP1/1 2.42 632:G/1 2.79 ALA256:C.N/1
DC403:G.OP2/1 2.92 682:G/1 3.02 GLN257:C.N/1
DA426:K.OP1/1 2.81 939:C/1 2.48 TYR236:C.OH/1
DA426:K.OP2/1 2.86 687:K/1 2.91 GLN257:C.O/1
DA426:K.OP2/1 2.64 679:K/1 3.5 ARG258:C.NE/1
DA426:K.OP2/1 2.64 679:K/1 3.08 ALA259:C.N/1
DG428:K.OP2/1 2.8 633:C/1 2.55 ARG258:C.NH1/1
DG428:K.N3/1 3.21 661:C/1 2.86 PHE110:C.O/1
DA429:K.OP1/1 2.62 673:K/1 2.96 LYS56:C.N/1
DA429:K.N7/1 3.03 776:C/1 3.02 ARG258:C.NH1/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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