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Nucleic atom dist Protein atom
G407:B.OP1/1 2.89 GLN132:A.N/1
G407:B.OP2/1 2.63 GLY133:A.N/1
G408:B.OP2/1 2.55 LYS130:A.N/1
G408:B.N7/1 2.93 LYS130:A.NZ/1
G408:B.O6/1 3.16 LYS130:A.NZ/1
U409:B.OP1/1 2.94 LYS176:A.NZ/1
U409:B.OP2/1 2.63 ARG151:A.NH1/1
U409:B.OP2/1 3.15 ARG151:A.NH2/1
U409:B.O2'/1 3.11 ALA46:A.N/1
U409:B.O4/1 2.46 LYS130:A.NZ/1
C411:B.OP1/1 2.64 ALA128:A.N/1
C411:B.OP1/1 2.66 TYR179:A.OH/1
C411:B.N4/1 3.04 ASP90:A.OD1/1
C411:B.N4/1 3.16 ASP90:A.OD2/1
G412:B.O4'/1 2.97 ARG141:A.NH1/1
G412:B.O4'/1 2.9 ARG141:A.NH2/1
A413:B.OP1/1 2.81 SER24:A.OG/1
A413:B.OP2/1 3.34 ASN26:A.ND2/1
A413:B.N6/1 2.98 HIS43:A.O/1
U414:B.OP2/1 2.63 LYS135:A.NZ/1
C415:B.N4/1 3.28 ASN26:A.ND2/1
C417:B.OP1/1 3.2 THR63:A.OG1/1
C417:B.O2'/1 2.57 GLN67:A.OE1/1
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Nucleic atom d_n2w water d_p2w Protein atom
G407:B.OP1/1 2.85 755:A/1 2.83 LYS130:A.O/1
G408:B.OP1/1 2.9 525:A/1 2.82 LYS130:A.O/1
G408:B.OP1/1 2.48 599:B/1 3.1 ARG151:A.NH1/1
G408:B.O2'/1 2.75 512:B/1 3.17 GLN67:A.OE1/1
G408:B.O2'/1 2.75 512:B/1 3.27 GLN67:A.NE2/1
G408:B.O2'/1 2.76 540:A/1 2.83 ASP71:A.OD1/1
G408:B.O2'/1 2.76 540:A/1 2.71 LYS176:A.NZ/1
G408:B.N3/1 2.79 512:B/1 3.17 GLN67:A.OE1/1
G408:B.N3/1 2.79 512:B/1 3.27 GLN67:A.NE2/1
U409:B.OP2/1 3.05 630:A/1 2.97 TYR179:A.OH/1
U409:B.O5'/1 2.99 630:A/1 2.97 TYR179:A.OH/1
U409:B.O4/1 2.61 554:B/1 3.14 LYS130:A.NZ/1
C411:B.O2/1 2.81 575:A/1 2.51 ARG141:A.NE/1
C411:B.O2/1 2.81 575:A/1 2.86 ARG141:A.NH2/1
G412:B.OP1/1 3.04 523:A/1 2.86 HIS43:A.NE2/1
G412:B.OP1/1 2.92 519:A/1 2.81 TYR137:A.OH/1
G412:B.OP2/1 2.67 503:B/1 2.89 SER25:A.N/1
G412:B.OP2/1 2.95 526:B/1 2.92 ASN26:A.N/1
A413:B.O5'/1 2.89 526:B/1 2.92 ASN26:A.N/1
A413:B.N3/1 2.7 577:A/1 2.54 ASN26:A.OD1/1
C415:B.O2'/1 2.66 577:A/1 2.54 ASN26:A.OD1/1
C416:B.OP1/1 3.21 566:A/1 2.79 LYS33:A.NZ/1
C416:B.OP1/1 3.21 566:A/1 3.02 ALA41:A.N/1
C416:B.O2'/1 2.65 750:B/1 2.93 HIS43:A.O/1
C416:B.O2'/1 2.65 750:B/1 2.91 SER66:A.OG/1
C416:B.O2/1 2.81 750:B/1 2.91 SER66:A.OG/1
C417:B.OP1/1 2.85 580:B/1 2.93 ARG307:A.NH2/1
C417:B.O3'/1 3.23 509:A/1 2.83 LYS64:A.O/1
C417:B.O3'/1 3.23 509:A/1 3.03 GLN67:A.N/1
C417:B.O2'/1 3.21 509:A/1 2.83 LYS64:A.O/1
C417:B.O2'/1 3.21 509:A/1 3.03 GLN67:A.N/1
G418:B.OP1/1 2.63 514:B/1 2.78 LYS64:A.O/1
G418:B.OP1/1 2.63 514:B/1 2.83 ARG307:A.NE/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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