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Nucleic atom dist Protein atom
DT1001:B.OP1/1 3.37 ARG455:A.NE/1
DT1001:B.O2/1 2.91 ASN420:A.ND2/1
DT1002:B.OP1/1 3.2 GLN419:A.NE2/1
DT1002:B.OP1/1 2.81 MET458:A.N/1
DT1002:B.O4'/1 3.14 ASN420:A.ND2/1
PST1003:B.OP2/1 2.51 TYR497:A.OH/1
PST1003:B.O3'/1 2.71 GLU357:A.OE1/1
PST1003:B.O3'/1 2.7 THR358:A.N/1
PST1003:B.O3'/1 3.29 THR358:A.O/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT1001:B.O2/1 3 209:B/1 2.9 ASN420:A.ND2/1
DT1002:B.O3'/1 2.98 105:A/1 2.82 THR356:A.O/1
DT1002:B.O3'/1 2.98 105:A/1 2.7 ASP424:A.OD1/1
DT1002:B.O2/1 2.82 209:B/1 2.9 ASN420:A.ND2/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2019

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