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Nucleic atom dist Protein atom
DA-55:I.OP1/1 2.89 SER53:D.N/1
DA-55:I.OP2/1 2.96 SER53:D.OG/1
DC-49:I.O2/1 3.28 LYS24:D.NZ/1
DA-47:I.OP1/1 2.75 SER11:D.OG/1
DG-43:I.OP1/1 2.92 ARG17:C.N/1
DG-43:I.OP2/1 2.79 ARG17:C.NE/1
DT-42:I.OP1/1 2.93 LYS13:C.N/1
DG-34:I.OP1/1 3.23 THR85:D.N/1
DG-34:I.OP1/1 3 THR85:D.OG1/1
DG-34:I.OP2/1 3.13 SER84:D.N/1
DA-33:I.OP2/1 3.42 ARG83:D.NH2/1
DG-28:I.O3'/1 2.77 ARG26:H.NH1/1
DC-27:I.OP1/1 2.45 ARG26:H.NH1/1
DC-27:I.OP1/1 2.69 ARG26:H.NH2/1
DC-24:I.OP2/1 3.01 SER86:A.N/1
DA-23:I.OP1/1 2.91 ARG72:A.NH1/1
DA-23:I.OP1/1 3.17 PHE84:A.N/1
DA-23:I.OP2/1 2.87 ARG72:A.NH2/1
DA-13:I.OP1/1 2.87 ARG36:B.NH2/1
DA-13:I.OP2/1 3.13 ARG36:B.NH1/1
DT-10:I.OP1/1 2.58 LYS5:B.O/1
DT-9:I.OP1/1 3.06 LYS5:B.NZ/1
DG-3:I.OP1/1 2.76 VAL117:A.N/1
DG-3:I.OP1/1 2.86 THR118:A.N/1
DG-3:I.OP1/1 2.77 THR118:A.OG1/1
DT7:I.OP2/1 2.8 GLY48:F.N/1
DG8:I.OP1/1 2.79 ILE46:F.N/1
DG8:I.O3'/1 3.29 GLY44:E.N/1
DA9:I.OP1/1 2.72 GLY44:E.N/1
DA9:I.OP1/1 2.96 VAL46:E.N/1
DA9:I.OP1/1 3.12 ALA47:E.N/1
DA9:I.N3/1 2.97 ARG40:E.NH2/1
DA10:I.OP1/1 2.75 TYR41:E.N/1
DA10:I.O4'/1 3.25 ARG40:E.NH1/1
DT17:I.OP2/1 2.84 ARG69:E.NH1/1
DT18:I.OP1/1 2.6 ARG63:E.NH1/1
DT18:I.OP1/1 2.95 LYS64:E.N/1
DT18:I.OP2/1 2.83 LEU65:E.N/1
DG24:I.O3'/1 2.68 LYS16:F.NZ/1
DG25:I.OP1/1 2.57 LYS12:F.NZ/1
DG25:I.OP1/1 3.15 LYS16:F.NZ/1
DG25:I.OP2/1 2.73 SER1:F.N/1
DG27:I.OP1/1 2.4 LYS79:F.NZ/1
DG27:I.OP2/1 3.02 GLY9:F.O/1
DC28:I.OP1/1 2.95 LYS79:F.N/1
DC28:I.OP1/1 2.58 THR80:F.OG1/1
DG30:I.OP1/1 2.51 THR29:D.OG1/1
DG30:I.N2/1 3.35 ARG26:D.NH1/1
DT31:I.OP1/1 2.56 GLY10:D.O/1
DA38:I.OP1/1 2.81 ALA45:G.N/1
DT39:I.OP1/1 2.48 ARG35:G.NH1/1
DT39:I.OP1/1 3.13 VAL43:G.N/1
DT39:I.OP2/1 2.31 ARG35:G.NH2/1
DT45:I.O2/1 2.34 LYS13:G.NZ/1
DT46:I.O4'/1 2.51 LYS13:G.NZ/1
DG48:I.N3/1 3.25 ARG30:H.NH1/1
DG49:I.OP1/1 3.11 ARG29:G.NH2/1
DG49:I.OP1/1 3 SER33:H.N/1
DG49:I.O4'/1 3.03 ARG30:H.NH1/1
DT50:I.OP1/1 3.31 LYS31:H.N/1
DC59:I.OP1/1 3.13 ARG77:G.N/1
DC59:I.OP2/1 3.24 THR76:G.N/1
DA60:I.OP2/1 3.34 LYS75:G.NZ/1
DG71:I.OP1/1 2.7 ARG42:A.N/1
DG71:I.OP1/1 2.56 THR45:A.OG1/1
DA72:I.OP1/1 2.91 ARG42:A.NH1/1
DA-55:J.OP1/1 3 SER53:H.N/1
DA-55:J.OP2/1 2.65 SER53:H.OG/1
DA-44:J.OP2/1 2.75 ARG32:G.NE/1
DG-43:J.OP1/1 2.98 ARG17:G.N/1
DG-43:J.OP2/1 3.14 ARG17:G.NE/1
DG-43:J.OP2/1 3.23 ARG17:G.NH2/1
DG-41:J.OP1/1 3.04 GLN6:G.O/1
DG-41:J.OP2/1 3.36 GLN6:G.NE2/1
DT-40:J.OP2/1 2.99 LYS5:G.NZ/1
DG-34:J.OP1/1 3.14 THR85:H.N/1
DG-34:J.OP1/1 2.96 THR85:H.OG1/1
DG-34:J.OP2/1 3.08 SER84:H.N/1
DA-33:J.OP2/1 3.11 ARG83:H.NH2/1
DT-26:J.OP1/1 2.57 LYS25:D.NZ/1
DC-24:J.OP2/1 3.04 SER86:E.N/1
DA-23:J.OP1/1 2.91 ARG72:E.NH1/1
DA-23:J.OP1/1 2.9 PHE84:E.N/1
DA-23:J.OP2/1 2.9 ARG72:E.NH2/1
DA-13:J.OP1/1 3.32 ARG63:E.NE/1
DA-13:J.OP1/1 2.81 ARG36:F.NH2/1
DA-13:J.OP2/1 2.86 ARG36:F.NH1/1
DG-6:J.OP2/1 2.36 LYS128:C.NZ/1
DG-6:J.O5'/1 2.97 LYS128:C.NZ/1
DC-5:J.OP1/1 2.57 ARG42:E.NE/1
DC-5:J.OP1/1 2.68 ARG42:E.NH2/1
DG-3:J.OP1/1 2.96 VAL117:E.N/1
DG-3:J.OP1/1 2.62 THR118:E.OG1/1
DT7:J.OP2/1 3.06 GLY48:B.N/1
DG8:J.OP1/1 2.74 ILE46:B.N/1
DG8:J.OP2/1 2.93 ARG35:B.NH2/1
DG8:J.O3'/1 3.28 GLY44:A.N/1
DA9:J.OP1/1 2.88 GLY44:A.N/1
DA9:J.OP1/1 2.84 VAL46:A.N/1
DA9:J.OP1/1 3.02 ALA47:A.N/1
DA9:J.N3/1 2.98 ARG40:A.NH2/1
DA10:J.OP1/1 2.74 TYR41:A.N/1
DG14:J.OP1/1 3.01 GLY9:B.O/1
DC15:J.OP2/1 2.45 ARG17:B.NH1/1
DC15:J.OP2/1 2.34 ARG17:B.NH2/1
DC15:J.O5'/1 2.68 ARG17:B.NH1/1
DC16:J.OP1/1 2.71 ARG19:B.NH2/1
DC16:J.OP2/1 3.3 HIS18:B.N/1
DC16:J.OP2/1 3.14 HIS18:B.O/1
DT17:J.OP1/1 2.75 ARG69:A.NH2/1
DT18:J.OP1/1 3.37 LYS64:A.N/1
DT18:J.OP2/1 2.84 LEU65:A.N/1
DG27:J.OP2/1 3.08 LYS79:B.NZ/1
DC28:J.OP1/1 2.82 LYS79:B.N/1
DC28:J.OP1/1 2.61 THR80:B.OG1/1
DG30:J.OP2/1 2.74 THR29:H.OG1/1
DT31:J.OP2/1 3.18 LYS25:H.NZ/1
DA38:J.OP1/1 2.88 ALA45:C.N/1
DT39:J.OP1/1 2.85 ARG35:C.NH1/1
DT39:J.OP1/1 3.29 VAL43:C.N/1
DT39:J.OP2/1 2.65 ARG35:C.NH2/1
DG48:J.N3/1 2.92 ARG30:D.NH2/1
DG49:J.OP1/1 3.34 ARG29:C.NH1/1
DG49:J.OP1/1 3.2 ARG29:C.NH2/1
DG49:J.OP1/1 2.85 SER33:D.N/1
DG49:J.OP1/1 3.21 SER33:D.O/1
DG49:J.O4'/1 3.05 ARG30:D.NH2/1
DT50:J.OP1/1 2.5 LYS28:D.NZ/1
DT50:J.OP1/1 2.74 LYS31:D.N/1
DT50:J.O2/1 2.42 LYS24:D.NZ/1
DA51:J.O3'/1 3.35 LYS24:D.N/1
DC59:J.OP1/1 3.16 THR76:C.N/1
DC59:J.OP1/1 2.96 ARG77:C.N/1
DC59:J.OP2/1 3.15 THR76:C.N/1
DG71:J.OP1/1 2.67 ARG42:E.N/1
DG71:J.OP1/1 2.54 THR45:E.OG1/1
DA72:J.O3'/1 2.8 LYS37:E.NZ/1
DT73:J.O3'/1 2.43 ALA25:E.O/1
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Nucleic atom d_n2w water d_p2w Protein atom
DT-68:I.OP1/1 2.39 3324:I/1 2.8 HIS39:E.N/1
DT-68:I.O2/1 2.79 3300:J/1 2.86 TYR41:E.OH/1
DG-56:I.N3/1 2.96 3374:I/1 3.32 ARG77:C.NH2/1
DA-55:I.OP1/1 2.8 3216:I/1 2.98 SER53:D.OG/1
DA-55:I.OP1/1 2.8 3216:I/1 3.17 LYS54:D.N/1
DT-54:I.OP1/1 2.9 3223:D/1 2.88 ILE51:D.N/1
DA-46:I.N7/1 3.1 3534:I/1 3.25 LYS9:D.NZ/1
DA-44:I.OP1/1 2.6 3157:I/1 2.85 ARG29:C.N/1
DG-43:I.OP1/1 2.7 3175:I/1 2.88 GLY28:C.N/1
DT-42:I.OP2/1 2.58 3833:I/1 2.74 LYS122:D.NZ/1
DG-34:I.OP2/1 2.51 3786:I/1 3.45 ARG83:D.NH1/1
DA-33:I.OP1/1 2.73 3327:I/1 2.96 ARG83:D.NE/1
DA-33:I.OP2/1 2.39 3649:I/1 2.89 ARG83:D.NH2/1
DC-24:I.OP1/1 2.85 3213:I/1 3.33 GLN85:A.NE2/1
DC-24:I.OP2/1 2.98 3154:A/1 2.74 SER86:A.OG/1
DC-24:I.OP2/1 2.98 3154:A/1 2.98 SER87:A.N/1
DA-23:I.OP2/1 2.5 3902:I/1 2.72 PHE84:A.O/1
DA-23:I.O4'/1 2.62 3332:I/1 2.61 ARG83:A.NH1/1
DA-23:I.O4'/1 2.62 3332:I/1 2.81 ARG83:A.NH2/1
DT-12:I.OP2/1 2.63 3282:I/1 2.91 LYS31:B.N/1
DG-6:I.N2/1 3.48 3912:I/1 2.92 ARG45:B.NH2/1
DC-5:I.O2/1 2.82 3912:I/1 2.92 ARG45:B.NH2/1
DT-4:I.OP1/1 2.79 3361:I/1 2.83 PRO43:A.O/1
DT-4:I.OP1/1 3.23 157:B/1 2.96 LYS44:B.NZ/1
DT-4:I.O4'/1 2.61 3912:I/1 2.92 ARG45:B.NH2/1
DG-3:I.OP2/1 2.75 3256:I/1 2.96 LYS115:A.O/1
DG5:I.N2/1 3.28 3156:I/1 2.93 ARG45:F.NH2/1
DC6:I.O2/1 2.5 3156:I/1 2.93 ARG45:F.NH2/1
DG8:I.OP1/1 2.48 3899:I/1 2.97 ARG39:F.NH1/1
DG8:I.OP1/1 2.48 3899:I/1 2.9 ARG39:F.NH2/1
DG8:I.OP2/1 2.89 295:F/1 3.09 ARG35:F.NE/1
DG8:I.OP2/1 2.83 130:F/1 2.72 ILE46:F.O/1
DG8:I.OP2/1 2.83 130:F/1 2.75 TYR51:F.OH/1
DG8:I.OP2/1 2.89 295:F/1 2.81 TYR51:F.OH/1
DG8:I.N2/1 3.21 3255:E/1 2.63 ARG40:E.NH2/1
DA9:I.OP2/1 2.47 3164:I/1 2.73 ARG39:F.NH2/1
DA9:I.O4'/1 2.88 3255:E/1 2.63 ARG40:E.NH2/1
DA10:I.OP1/1 2.62 3149:I/1 3.21 HIS39:E.O/1
DA10:I.OP1/1 2.62 3149:I/1 2.72 HIS39:E.ND1/1
DA10:I.OP2/1 2.68 3174:I/1 2.71 ARG49:E.NH1/1
DA10:I.N3/1 3.16 3208:E/1 2.83 ARG40:E.NH1/1
DT18:I.OP1/1 2.55 3172:I/1 3.21 ARG63:E.NH1/1
DG25:I.N3/1 2.99 3444:I/1 3.24 ARG83:E.NH2/1
DA26:I.O4'/1 2.51 3444:I/1 3.24 ARG83:E.NH2/1
DA26:I.N3/1 2.93 3286:E/1 3.24 ARG83:E.NE/1
DA26:I.N3/1 2.93 3286:E/1 2.72 ARG83:E.NH2/1
DA29:I.OP1/1 3.1 3242:E/1 2.88 GLN85:E.NE2/1
DA29:I.N3/1 3.14 3436:I/1 2.82 ARG26:D.NH2/1
DG30:I.OP1/1 2.95 3303:D/1 2.86 THR29:D.OG1/1
DG30:I.O4'/1 2.54 3436:I/1 2.82 ARG26:D.NH2/1
DA37:I.N3/1 3 3367:I/1 3.31 ARG42:G.NH2/1
DA38:I.N3/1 2.63 3505:J/1 3.14 ARG42:G.NH2/1
DT39:I.OP2/1 2.86 3264:I/1 3.19 ARG35:G.NH2/1
DT46:I.O2/1 3 224:G/1 2.68 LYS13:G.NZ/1
DG48:I.OP1/1 2.75 3317:H/1 2.63 TYR37:H.OH/1
DG48:I.N2/1 3.23 3910:J/1 3.16 ARG30:H.NH1/1
DG49:I.OP2/1 2.63 3218:I/1 2.96 SER33:H.O/1
DG49:I.OP2/1 2.63 3218:I/1 3.04 ILE36:H.N/1
DT50:I.O3'/1 2.9 3324:H/1 2.65 LYS24:H.O/1
DT57:I.O2/1 2.92 255:G/1 2.71 ARG77:G.NH2/1
DG58:I.N3/1 2.61 3897:I/1 2.89 ARG77:G.NH1/1
DC59:I.OP1/1 2.57 3155:I/1 2.67 ARG77:G.O/1
DT69:I.O2/1 2.74 3285:I/1 2.82 TYR41:A.OH/1
DA-69:J.N3/1 2.7 3333:A/1 3.03 TYR41:A.OH/1
DT-68:J.O4'/1 3.01 3333:A/1 3.03 TYR41:A.OH/1
DT-68:J.O2/1 2.93 3285:I/1 2.82 TYR41:A.OH/1
DA-55:J.OP1/1 2.89 3314:H/1 2.81 LYS54:H.N/1
DT-54:J.OP1/1 2.75 3707:J/1 3.16 ILE51:H.N/1
DA-53:J.OP2/1 2.42 3720:J/1 3.26 TYR39:H.OH/1
DA-47:J.N3/1 2.61 3910:J/1 3.16 ARG30:H.NH1/1
DA-44:J.OP1/1 2.59 3216:J/1 3.07 ARG29:G.N/1
DA-44:J.OP1/1 2.27 3301:J/1 2.93 ARG29:G.NE/1
DG-43:J.OP1/1 2.87 3162:J/1 3.17 SER18:G.N/1
DG-43:J.OP1/1 2.87 3162:J/1 2.92 SER18:G.OG/1
DG-43:J.OP1/1 2.87 3162:J/1 3.22 GLY28:G.N/1
DT-37:J.O2/1 2.55 3505:J/1 3.14 ARG42:G.NH2/1
DG-35:J.OP1/1 2.59 3631:J/1 2.61 GLU41:G.OE2/1
DG-34:J.OP2/1 2.55 3455:J/1 3.18 ARG83:H.NH1/1
DA-33:J.OP2/1 2.58 3412:J/1 2.64 ARG83:H.NH2/1
DC-27:J.N4/1 3.2 163:F/1 2.9 SER1:F.O/1
DC-24:J.OP1/1 2.8 3403:J/1 3 GLN85:E.NE2/1
DC-24:J.OP2/1 3.25 3233:E/1 3.04 SER87:E.N/1
DA-23:J.OP1/1 2.81 3877:J/1 3.15 ARG72:E.NH1/1
DA-23:J.OP1/1 2.81 3877:J/1 2.91 ARG19:F.NH2/1
DA-23:J.OP2/1 2.66 3200:E/1 2.61 PHE84:E.O/1
DA-23:J.O4'/1 2.78 3336:E/1 2.76 ARG83:E.NH2/1
DC-14:J.OP1/1 2.86 3222:J/1 3.39 ARG63:E.NH1/1
DC-14:J.OP1/1 3.09 3226:E/1 3.04 ARG63:E.NH2/1
DA-13:J.OP1/1 2.92 167:F/1 2.51 THR30:F.OG1/1
DT-12:J.OP1/1 2.96 149:F/1 2.85 GLN27:F.O/1
DT-12:J.OP2/1 2.61 3145:J/1 2.98 LYS31:F.N/1
DG-6:J.N2/1 3.18 3897:J/1 3.09 ARG45:F.NH2/1
DC-5:J.OP1/1 2.67 3249:J/1 2.81 PRO43:E.O/1
DC-5:J.O2/1 2.92 3897:J/1 3.09 ARG45:F.NH2/1
DT-4:J.OP1/1 2.76 178:C/1 2.75 GLU121:C.OE2/1
DT-4:J.OP1/1 2.54 3233:J/1 3 PRO43:E.O/1
DT-4:J.O4'/1 2.8 3897:J/1 3.09 ARG45:F.NH2/1
DG-3:J.OP2/1 2.41 3275:J/1 2.98 LYS115:E.O/1
DG-2:J.OP2/1 2.6 3945:J/1 2.95 LYS115:A.NZ/1
DG-2:J.OP2/1 2.6 3945:J/1 2.86 LYS122:E.NZ/1
DG5:J.N2/1 2.98 3326:J/1 2.83 ARG45:B.NH2/1
DC6:J.O2/1 2.69 3326:J/1 2.83 ARG45:B.NH2/1
DT7:J.OP1/1 2.73 189:B/1 2.49 SER47:B.OG/1
DG8:J.OP1/1 2.77 145:B/1 2.95 ARG39:B.NH1/1
DG8:J.OP1/1 2.77 145:B/1 2.37 ARG39:B.NH2/1
DG8:J.OP1/1 2.77 145:B/1 2.68 LYS44:B.O/1
DG8:J.OP2/1 2.78 3282:J/1 3.21 ARG35:B.NH2/1
DG8:J.OP2/1 3 135:B/1 2.62 ILE46:B.O/1
DG8:J.OP2/1 3 135:B/1 2.99 TYR51:B.OH/1
DA9:J.OP2/1 2.73 3217:A/1 2.75 ARG39:B.NH2/1
DA10:J.OP1/1 2.85 3219:A/1 2.49 HIS39:A.ND1/1
DA10:J.OP2/1 2.64 3223:A/1 2.45 ARG49:A.NH2/1
DA10:J.N3/1 3.17 3230:A/1 2.88 ARG40:A.NH1/1
DG14:J.OP1/1 2.65 209:B/1 2.41 GLY11:B.N/1
DC16:J.N4/1 2.59 3477:J/1 3.43 ARG17:B.NH2/1
DG25:J.N3/1 3.13 3939:J/1 3.15 ARG83:A.NH1/1
DG25:J.N3/1 3.13 3939:J/1 3.02 ARG83:A.NH2/1
DA26:J.O4'/1 2.53 3939:J/1 3.15 ARG83:A.NH1/1
DA26:J.O4'/1 2.53 3939:J/1 3.02 ARG83:A.NH2/1
DA26:J.N3/1 2.65 3247:J/1 3.01 ARG83:A.NH1/1
DA29:J.OP1/1 2.82 3237:J/1 2.86 GLN85:A.NE2/1
DT31:J.OP2/1 2.52 3879:J/1 3.24 LYS25:H.NZ/1
DT39:J.OP2/1 2.69 252:C/1 2.77 ARG35:C.NH2/1
DT47:J.OP1/1 2.84 233:C/1 2.48 ALA14:C.O/1
DG48:J.OP1/1 2.83 3193:D/1 2.45 TYR37:D.OH/1
DG48:J.N2/1 3.28 3239:D/1 2.38 ARG27:D.NH2/1
DG48:J.N2/1 3.28 3239:D/1 3.27 ARG30:D.NH2/1
DG49:J.OP2/1 2.51 3166:J/1 2.99 SER33:D.O/1
DG49:J.OP2/1 2.51 3166:J/1 2.95 ILE36:D.N/1
DG49:J.N3/1 2.97 3239:D/1 2.38 ARG27:D.NH2/1
DG49:J.N3/1 2.97 3239:D/1 3.27 ARG30:D.NH2/1
DG58:J.N3/1 2.69 3200:J/1 2.92 ARG77:C.NH1/1
DC59:J.OP1/1 2.53 3157:J/1 2.68 ARG77:C.O/1
DA60:J.OP1/1 2.76 3375:J/1 3.25 LYS75:C.NZ/1
DA60:J.OP2/1 2.96 3676:J/1 3.28 LYS75:C.NZ/1
DT69:J.O2/1 2.69 3300:J/1 2.86 TYR41:E.OH/1
DT70:J.O2/1 2.51 3287:J/1 2.69 HIS39:E.NE2/1
DG71:J.O4'/1 3.26 3287:J/1 2.69 HIS39:E.NE2/1
DA72:J.OP1/1 2.62 3452:J/1 2.78 ARG40:E.O/1
DT73:J.O3'/1 2.49 3339:E/1 2.49 ALA24:E.O/1
DT73:J.O3'/1 2.49 3339:E/1 2.61 ALA25:E.O/1
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Core number Atoms Action

  Hbonds:

Hbonds service shows hydrogen bonds on the NA-protein interface. One H-bond is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Dist is distance from nucleic atom to protein atom in angstroms (Å).

  W-Bridges:

W-Bridges service shows Water-bridges on the NA-protein interface. One Water-bridge is one line in the table, where:
 Nucleic atom is atom of nucleic acid in Jmol/RasMol format.
 Protein atom is atom of protein in Jmol/RasMol format.
 Water is water molecule.
 d_n2w is distance from nucleic atom to water molecule (Å).
 d_p2w is distance from protein atom to water molecule (Å).

  CluD:

CluD service shows hydrophobic clusters on the NA-protein interface. One Cluster is one line in the table, where:
 Core number is serial number of cluster.
 Atoms is number of detected atoms in the cluster.
© NPIDB team 2003 - 2021

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